Author

Amélie Roehrig

ORCID 0000-0002-1120-4151Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Research Focus:cell type annotation· 3 Organism:human· 3 Assay:scRNA-seq· 3 Approach:deep learning· 2 Research Focus:differential expression· 2 Research Focus:gene regulatory network inference· 2 Approach:statistical model· 2 Assay:ChIP-seq· 1

Frequent Co-Authors

Céline VallotiD· 3 shared Baptiste SimoniD· 2 shared Éric LetouzéiD· 2 shared Juliette BertorelloiD· 2 shared Luc CabeliD· 2 shared Maud T KamaliD· 2 shared Adeline DurandiD· 1 shared Agathe Kahn· 1 shared

Activity by Year

2025-2026 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 33 mutual co-author links

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3 shared papersCancer Biology

Céline VallotORCID

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Author profile →

3 papers

Recent·Most cited

Routine FFPE sections support clinically compatible single-nucleus transcriptomics across six human cancer types

Jasper Wouters, Juliette Bertorello, Marine Gaillard, Baptiste Simon, Sarah Gastineau, Amélie Roehrig, Maud Dupont-Roc, Elise Amblard, Amanda Pupo, Helena Yu, Jean‐Yves Blay, Coralie L. Guérin, Laëtitia Nebot-Bral, Anne Vincent‐Salomon, Loïc Verlingue, , Céline Vallot

This paper develops a workflow for single-nucleus transcriptomics from FFPE tumor samples, showing reproducible cellular composition analysis across six cancer types.

bioRxiv · Jul 28, 2026 · PreprintCancer Biology

Single-cell trajectories in metastatic urothelial carcinoma reveal tumor-immune reprogramming and macrophage-driven resistance to PD-(L)1 blockade

Ronan Flippot, Amélie Roehrig, Julien Vibert, Nicolas Stransky, Luc Cabel, Kevin Mulder, Benjamin Besse, Claudio Nicotra, Maud Ngo Camus, Christophe Massard, Étienne Rouleau, Gérôme Jules-Clément, Alicia Tran-Dien, Lambros Tselikas, Constance Thibault, , Yohann Loriot

This study uses single-cell RNA sequencing to analyze metastatic urothelial carcinoma and identifies macrophage-driven resistance to PD-(L)1 blockade as a key mechanism.

bioRxiv · Apr 2, 2026 · PreprintCancer Biology

A single-nucleus multimodal framework reveals epigenomic priming of chemoresistant states in ovarian cancer

Yuna Landais, Juliette Bertorello, Marta Puerto, Agathe Kahn, Baptiste Simon, Amélie Roehrig, Adeline Durand, Marceau Quatredeniers, Constance Lamy, Enora Laas, Nicolas Pouget, Simon Dumas, Jean-Guillaume Féron, Virginie Fourchotte, Claire Bonneau, , Céline Vallot

This paper develops a single-nucleus multimodal framework to analyze transcriptional and histone modification landscapes in ovarian cancer, revealing epigenomic priming of chemoresistant states and its impact on treatment outcomes.

bioRxiv · Dec 8, 2025 · PreprintCancer Biology