Yang Xu

This paper introduces SuperSCC, a method for discovering cell identities and gene modules across datasets without integration, showing improved annotation accuracy and conserved immune cell status identification in lung microenvironments.

SpatialBench evaluates spatial transcriptomics platforms using a mouse spleen model, finding consistent biological signals but varying resolution across technologies.

stPipe provides a flexible R/Bioconductor pipeline for preprocessing spatial transcriptomics data from multiple platforms, enabling standardized analysis and benchmarking.

This study compares six sequencing-based spatial transcriptomic methods using reference tissues, highlighting molecular diffusion as a key variable affecting resolution and identifying unique attributes of spatial transcriptomic data.