Author

Qi Liu

John Innes CentreORCID 0009-0008-6747-6085Unclaimed ORCID profile · follow to get notified of new preprints

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Qi Liu17 papers · Tongji University

Biology Disciplines

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Bioinformatics· 1 Molecular Biology· 1

Signature Assays, Organisms & Methods

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Organism:Arabidopsis· 1 Research Focus:cell-cell communication· 1 Research Focus:database / resource· 1 Approach:deep learning· 1 Research Focus:differential expression· 1 Approach:experimental assay· 1 Research Focus:gene regulatory network inference· 1 Approach:large language model· 1

Frequent Co-Authors

Alberto CarbonelliD· 1 shared Boyan ZhangiD· 1 shared Enhong CheniD· 1 shared Hugh C. WoolfendeniD· 1 shared Jiawei WangiD· 1 shared Jiaxian YaniD· 1 shared Jinchuan Xiao· 1 shared Jintao ZhuiD· 1 shared

Activity by Year

2020-2025 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 21 mutual co-author links

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1 shared paperMolecular Biology

Alberto CarbonellORCID

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2 papers

Recent·Most cited

BioinformaticsbioRxivPreprintApr 22, 2025

BioMiner: A Multi-modal System for Automated Mining of Protein-Ligand Bioactivity Data from Literature

Jiaxian Yan, Jintao Zhu, Yuhang Yang…·Enhong Chen

BioMiner automates extraction of protein-ligand bioactivity data from literature, achieving an F1 score of 0.32 and improving downstream model performance by 3.9%.

1 citation

proteomicsdeep learning

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Molecular BiologyNucleic Acids ResearchPeer-reviewedJun 24, 2020

Intact RNA structurome reveals mRNA structure-mediated regulation of miRNA cleavage in vivo

Minglei Yang, Hugh C. Woolfenden, Yueying Zhang…·Yiliang Ding

The paper investigates how mRNA structure affects miRNA cleavage in vivo using a new method in Arabidopsis thaliana, finding that target site unfolding and a downstream motif determine cleavage efficiency.

61 citationstop 3%

Arabidopsismultiome

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