Author

Ali Hamraoui

Centre National de la Recherche ScientifiqueORCID 0009-0008-7001-4252Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Bioinformatics· 2

Signature Assays, Organisms & Methods

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Research Focus:benchmarking· 2 Assay:long-read sequencing· 2 Assay:scRNA-seq· 2 Organism:human· 1 Approach:simulation· 1 Approach:statistical model· 1

Frequent Co-Authors

Laurent JourdreniD· 2 shared Morgane Thomas‐ChollieriD· 2 shared Audrey OnfroyiD· 1 shared Catherine Sénamaud‐BeaufortiD· 1 shared Fanny CoulpieriD· 1 shared Sophie LemoineiD· 1 shared

Activity by Year

2025-2026 · peak 1/yr

Co-Author Collaboration Network

6 top collaborators · 15 mutual co-author links

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2 shared papersBioinformatics

Laurent JourdrenORCID

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2 papers

Recent·Most cited

BioinformaticsNAR Genomics and BioinformaticsPeer-reviewedJun 27, 2026

A systematic benchmark of bioinformatics methods for single-cell and spatial RNA-seq Nanopore long-read data

Ali Hamraoui, Audrey Onfroy, Catherine Sénamaud‐Beaufort…·Morgane Thomas‐Chollier

This study benchmarks bioinformatics methods for single-cell and spatial RNA-seq Nanopore long-read data, evaluating their accuracy, robustness, and scalability across different protocols and sequencing conditions.

2 citations

scRNA-seqlong-read sequencing

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BioinformaticsBioinformaticsPeer-reviewedFeb 20, 2025

AsaruSim: a single-cell and spatial RNA-Seq Nanopore long-reads simulation workflow

Ali Hamraoui, Laurent Jourdren, Morgane Thomas‐Chollier

AsaruSim simulates synthetic single-cell Nanopore long-read datasets to evaluate isoform detection methods using human PBMC data.

4 citations

humanscRNA-seq

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