Erick Duarte

This paper presents the first fully phased, diploid, telomere-to-telomere genome of the zebra finch, revealing new genes and structural features.

The Vertebrate Genomes Project Phase I provides high-quality reference genomes for 816 species, enabling evolutionary and conservation insights across vertebrates.

The paper introduces rdeval, a tool for efficiently evaluating and visualizing sequencing read metrics, showing improvements in read quality and genome assembly with PacBio data.

This paper introduces new algorithms for de-novo genome assembly from long DNA reads, showing competitive efficiency and accuracy across multiple species.

NGSEP 4 improves orthogroup identification and whole genome alignment with better efficiency and visualization tools.