Author

Christophe Chassard

Université Clermont AuvergneORCID 0009-0009-4638-0495Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Evolutionary Biology· 1 Genomics· 1 Microbiology· 1

Signature Assays, Organisms & Methods

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Research Focus:clustering· 2 Assay:metagenomics· 2 Approach:statistical model· 2 Research Focus:benchmarking· 1 Research Focus:database / resource· 1 Research Focus:development & morphogenesis· 1 Research Focus:dimensionality reduction· 1 Approach:experimental assay· 1

Frequent Co-Authors

Adeline SimoniD· 1 shared Alexis DijamentiukiD· 1 shared Alodie SnirciD· 1 shared Anne‐Marie Revol‐JunellesiD· 1 shared Antoine BrancaiD· 1 shared Cécile CalloniD· 1 shared Cécile MangaveliD· 1 shared Céline DelbèsiD· 1 shared

Activity by Year

2019-2025 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 16 mutual co-author links

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1 shared paperEvolutionary Biology

Adeline SimonORCID

Mutual co-authors in cluster

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3 papers

Recent·Most cited

Evolutionary BiologyPLoS GeneticsPeer-reviewedApr 15, 2025

Generation of diversity in the blue cheese mold Penicillium roqueforti and identification of pleiotropic QTL for key cheese-making phenotypes

Thibault Caron, Ewen Crequer, Mélanie Le Piver…·Tatiana Giraud

This study identifies pleiotropic QTLs for key cheese-making traits in Penicillium roqueforti by analyzing F1 hybrids from cheese and non-cheese populations.

5 citations

fungi (other)whole-genome sequencing

𝕏 PostBluesky

MicrobiologymSystemsPeer-reviewedJul 23, 2024

Serial fermentation in milk generates functionally diverse community lineages with different degrees of structure stabilization

Chloé Gapp, Alexis Dijamentiuk, Cécile Mangavel…·Frédéric Borges

This study uses serial fermentation to show that microbial communities can develop different structural stabilities and acidification dynamics based on their taxonomic composition.

11 citations

metagenomicsexperimental assay

𝕏 PostBluesky

GenomicsBMC GenomicsPeer-reviewedJul 8, 2019

DAIRYdb: A manually curated gold standard reference database for improved taxonomy annotation of 16S rRNA gene sequences from dairy products

Marco Meola, Étienne Rifa, Noam Shani…·Christophe Chassard

DAIRYdb improves taxonomy annotation accuracy for dairy product microbiomes by providing a manually curated database of 16S rRNA gene sequences.

70 citations

metagenomicsstatistical model

𝕏 PostBluesky