Nina Marthe

The paper introduces GrAnnoT and GrAPEx to fully annotate pangenome graphs, integrating annotations from multiple genomes and annotating non-annotated regions, reducing reference bias.

GraTools is a command-line tool for manipulating pangenome variation graphs, enabling efficient subgraph extraction, sequence retrieval, and analysis of genomic diversity.

GrAnnoT transfers annotations to pangenome graphs, improving their utility for genomic analysis across species.