Mourdas Mohamed

SaVanache: indexing and visualizing pangenome variation graphs

SaVanache provides a visualization tool for exploring pangenome variation graphs, enabling interactive analysis of genetic diversity and structural variations.

GraTools, an user-friendly tool for exploring and manipulating pangenome variation graphs

GraTools is a command-line tool for manipulating pangenome variation graphs, enabling efficient subgraph extraction, sequence retrieval, and analysis of genomic diversity.

Temporal and spatial niche partitioning in a retrotransposon community of the Drosophila genome

The paper shows that four Drosophila LTR-RTEs integrate into distinct chromatin domains and exhibit differential expression in specific tissues, leading to temporal and spatial niche partitioning.

TrEMOLO: Accurate transposable element allele frequency estimation using long-read sequencing data combining assembly and mapping-based approaches

TrEMOLO estimates transposable element allele frequencies using long-read sequencing data by combining assembly and mapping approaches, outperforming existing tools in benchmark tests.