Author

Chuhan Qin

Imperial College LondonORCID 0009-0009-9798-4803Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Signature Assays, Organisms & Methods

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Assay:whole-genome sequencing· 2 Organism:bacteria (other)· 1 Research Focus:benchmarking· 1 Research Focus:chromatin & epigenetic regulation· 1 Approach:experimental assay· 1 Research Focus:phylogenetics / evolution· 1 Approach:simulation· 1 Approach:statistical model· 1

Frequent Co-Authors

Aline CuénodiD· 1 shared Anlei Peng· 1 shared Ashraful Islam KhaniD· 1 shared Ashton Creasy-MarrazzoiD· 1 shared B. Jesse ShapiroiD· 1 shared Emilee T. Cato· 1 shared Eric Jorge NelsoniD· 1 shared Firdausi QadriiD· 1 shared

Activity by Year

2025-2026 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 24 mutual co-author links

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1 shared paperMicrobiology

Aline CuénodORCID

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2 papers

Recent·Most cited

BioinformaticsbioRxivPreprintFeb 6, 2026

Rapid gene exchange explains differences in bacterial pangenome structure

Samuel Horsfield, Anlei Peng, Matthew Russell…·John A. Lees

The paper develops a model to analyze pangenome dynamics and finds that differences in bacterial pangenomes are mainly due to variation in the number of rapidly exchanged genes.

DOI 10.64898/2026.02.04.703695

bacteria (other)whole-genome sequencing

𝕏 PostBluesky

MicrobiologyMicrobial GenomicsPeer-reviewedJul 25, 2025

Vibrio cholerae lineage and pangenome diversity varies geographically across Bangladesh over one year

Chuhan Qin, Patrick Lypaczewski, Md. Abu Sayeed…·B. Jesse Shapiro

This study sequenced V. cholerae genomes from Bangladesh in 2018, revealing geographic variation in lineage dominance and pangenome diversity across regions.

4 citations

viruswhole-genome sequencing

𝕏 PostBluesky