Aline Cuénod

The paper develops a rules-based classifier to predict ciprofloxacin resistance in Klebsiella pneumoniae from genotype data and demonstrates its global distribution association with quinolone consumption.

The paper maps E. coli capsule serotypes using genomic data, identifies novel K-types, and develops an in silico serotyping tool applicable to diverse E. coli genomes.

This study sequenced V. cholerae genomes from Bangladesh in 2018, revealing geographic variation in lineage dominance and pangenome diversity across regions.

The paper reports chromosome fusions in clinical V. cholerae O1 isolates, showing stable transmission between patients within a household.

The paper completes the BASEL phage collection by overcoming host limitations to isolate new phages, revealing insights into viral host recognition and bacterial immunity.

This paper reclassifies SHV β-lactamase alleles in K. pneumoniae genomes based on mutations, improving genotype-phenotype understanding and updating the Kleborate tool.

The paper improves antimicrobial resistance prediction using MALDI-TOF MS by incorporating phylogenetic structure through hierarchical clustering, increasing average precision for specific resistance predictions.