bioRxivBiophysics
α-Synuclein emulsifies TDP-43 prion-like domain - RNA liquid droplets to promote heterotypic amyloid fibrils
S. Dhakal, M. Mondal, A. Mirzazadeh, S. Banerjee, A. Ghosh, V. Rangachari
Abstract
Many neurodegenerative diseases including frontotemporal lobar degeneration (FTLD), Lewy body disease (LBD), multiple system atrophy (MSA), etc., show colocalized deposits of TDP-43 and -synuclein (S) aggregates. To understand whether these colocalizations are driven by specific molecular interactions between the two proteins, we previously showed that the prion-like C-terminal domain of TDP-43 (TDP-43PrLD) and S synergistically interact to form neurotoxic heterotypic amyloids in homogeneous buffer conditions. However, it remains unclear whether and how S modulates TDP-43 present within liquid droplets and biomolecular condensates called stress granules (SGs). Here, using cell culture and in vitro TDP-43PrLD - RNA liquid droplets as models along with microscopy, nanoscale spatially-resolved spectroscopy, and other biophysical analyses, we uncover the interactions of S with phase-separated droplets. We learn that S acts as a Pickering agent by forming clusters on the surface of TDP-43PrLD - RNA droplets and emulsifying them. The hardening of the droplets that follow by S aggregates on the periphery, nucleates the formation of heterotypic TDP-43PrLD amyloid fibrils with structures distinct from those derived from homogenous solutions. Together, these results reveal an intriguing property of S as a Pickering agent in interacting with SGs and unmask the hitherto unknown role of S in modulating TDP-43 proteinopathies.
Reproducibility ledger
Nobody has reported trying to reproduce this paper yet. Did you replicate an experiment or run the code? Your report saves the next lab a week.
Sign in to file a reproducibility report.
Related papers
- Prion-like C-terminal domain of TDP-43 and α-Synuclein interact synergistically to generate neurotoxic hybrid fibrils
S. Dhakal, C. E. Wyant, … V. Rangachari·bioRxiv·Dec 12, 2020
- Distinct neurotoxic TDP-43 fibril polymorphs can be generated by heterotypic interactions with α-synuclein
S. Dhakal, A. S. Robang, … V. Rangachari·bioRxiv·Jun 14, 2022
- Heterotypic droplet formation by pro-inflammatory S100A9 and neurodegenerative disease-related alpha-synuclein
Dominykas Veiveris, Aurimas Kopūstas, … Mantas Žiaunys·BiomacromoleculesPeer-reviewed·May 15, 2025
- Granulins modulate liquid-liquid phase separation and aggregation of TDP-43 C-terminal domain
A. A. Bhopatkar, V. N. Uversky, V. Rangachari·bioRxiv·Oct 20, 2019
- Cytoplasmic Colocalization of Granulins and TDP-43 Prion-like Domain Involves Electrostatically Driven Coacervation Tuned by the Redox State of Cysteines.
A. A. Bhopatkar, S. Dhakal, V. Rangachari·bioRxiv·Jun 25, 2021
- TDP-43 oligomers detected as initial intermediate species during aggregate formation
R. L. French, A. N. Reeb, … Y. M. Ayala·bioRxiv·Dec 17, 2018