bioRxivCancer BiologyPreprint
Ancestry Influences on the Molecular Presentation of Tumours
Abstract
Epidemiological studies have identified innumerable ways in which cancer presentation and behaviour is associated with patient ancestry. The molecular bases for these relationships remain largely unknown. We analyzed ancestry associations in the somatic mutational landscape of 12,774 tumours across 33 tumour-types, including 2,562 with whole-genome sequencing. Ancestry influences both the number of mutations in a tumour and the evolutionary timing of when they occur. Specific mutational signatures are associated with ancestry, reflecting potential differences in exogenous and endogenous oncogenic processes. A subset of known cancer driver genes was mutated in ancestry-associated patterns, with transcriptomic consequences. Cancer genome sequencing data is not well-balanced in epidemiologic factors; these data suggest ancestry strongly shapes the somatic mutational landscape of cancer, with potential functional implications.
- organism: human
- assay: whole-genome sequencing
- research focus: cancer & tumor microenvironment
- research focus: variant calling
- research focus: gene regulatory network inference
- approach: statistical model
- approach: machine learning (classical)
Reproducibility ledger
Nobody has reported trying to reproduce this paper yet. Did you replicate an experiment or run the code? Your report saves the next lab a week.
Sign in to file a reproducibility report.
Related papers
- Age Influences on the Molecular Presentation of Tumours
C. H. Li, S. Haider, P. C. Boutros·bioRxiv·Jul 7, 2020
- Ancestry-Specific Predisposing Germline Variants in Cancer
Ninad Oak, Andrew D. Cherniack, … Kuan‐lin Huang·Genome MedicinePeer-reviewed·May 29, 2020
- Spectrum of somatic mutational features of colorectal tumors in ancestrally diverse populations
Marco Matejcic, Jamie K. Teer, … Stephanie L. Schmit·medRxiv·Mar 11, 2024
- Parent-of-origin phasing of somatic mutations shows equal mutation burden between parental genomes in human cancers
Maxime Lefebvre, Arnaud Cleris, … Maxime Tarabichi·bioRxiv·Sep 7, 2026
- A signature-agnostic test for differences between tumor mutation spectra reveals carcinogen and ancestry effects
S. Alexandra Hart, Nicolas Alcala, … Kelley Harris·Communications BiologyPeer-reviewed·Feb 20, 2026
- Topography of mutational signatures in human cancer
B. Otlu-Saritas, M. Diaz-Gay, … L. B. Alexandrov·bioRxiv·May 29, 2022