Potential possibility of using the DNA regions of the internal transcribed spacer ITS and the beta-tubulin gene TUB in the diagnosis of the pathogen Mycosphaerella linicola Naumov.
Abstract
During the study, the suitability of the ITS and TUB DNA regions was shown for identifying the target species at the genetic level. However, these DNA regions do not reveal significant differences between the sequences of the target species from different geographic regions. However, when constructing dendrograms of similarities and differences, the sequential differentiation between isolates at the population level was found, which may further affect the results of identification of the target species.
02 /Specification & Classification
Click any tag to browse matching papers- Citations
- 0
- Assay
- Approach
Reproducibility ledger
Nobody has reported trying to reproduce this paper yet. Did you replicate an experiment or run the code? Your report saves the next lab a week.
Sign in to file a reproducibility report.
Related papers
- Assessment of the suitability of marker fragments DNA sequences of the internal transcribed spacer region (ITS), beta-tubulin gene (TUB) and elongation factor (EF1) genes for diagnostics of Fusarium tricinctum species complex in Russian in grain products
A. Shchukovskaya·bioRxiv·Feb 15, 2021
- Speciation of the Mycobacterium tuberculosis complex using mass spectrometry: a proof-of-concept.
S. Robinne, J. Saad, … S. A. Baron·bioRxiv·Feb 4, 2021
- Population structure, biogeography and transmissibility of Mycobacterium tuberculosis
L. Freschi, R. Vargas, … M. R. Farhat·bioRxiv·Sep 29, 2020
- Six species of non-tuberculosis mycobacteria carry non-identical 16S rRNA gene copies
Keita Takeda, Kinuyo Chikamatsu, … Satoshi Mitarai·Journal of Microbiological MethodsPeer-reviewed·Aug 27, 2018
- A novel multi SNP based method for the identification of subspecies and associated lineages and sub-lineages of the Mycobacterium tuberculosis complex by whole genome sequencing
S. I. W. Lipworth, R. Jajou, … D. van Soolingen·bioRxiv·Jan 5, 2018
- A Novel DNA Chromatography Method to Distinguish M. abscessus Subspecies and Macrolide Susceptibility
M. Yoshida, S. Sano, … Y. Hoshino·bioRxiv·Sep 17, 2020