eLifeImmunologyPeer-reviewed journal article
Resting natural killer cells promote the progress of colon cancer liver metastasis by elevating tumor-derived sSCF
Chenchen MaoiD, Yanyu CheniD, Dong XingiD, Teming ZhangiD, Yangxuan Lin, Cong Long, Jiaye Yu, Yunhui Luo, Tao Ming, Dianfeng Mei, Wangkai XieiD, Zheng HaniD, Dan XiangiD, Mingdong LuiD, Xian SheniD, Xiangyang XueiD
Abstract
PurposeThe abundance and biological contribution of Natural killer (NK) cells in cancer are controversial. Here, we aim to uncover clinical relevance and cellular roles of NK cells in colon cancer liver metastasis (CCLM) MethodsWe integrated single-cell RNA sequencing, spatial transcriptomics, and bulk RNA-sequencing datasets to investigate NK cells biological properties and functions in the microenvironment of primary and liver metastatic tumors. Results were validated through an in vitro co-culture experiment based on bioinformatics analysis. ResultsWe used single-cell RNA sequencing and spatial transcriptomics to map the immune cellular landscape of colon cancer and well-matched liver metastatic cancer. We discovered that GZMK+ resting NK cells increased significantly in tumor tissues and were enriched in the tumor regions of both diseases. After combining bulk RNA and clinical data, we observed that these NK cell subsets contributed to a worse prognosis. Meanwhile, KIR2DL4+ activated NK cells exhibited the opposite position and relevance. Pseudotime cell trajectory analysis revealed the evolution of activated to resting NK cells. In vitro experiments further confirmed that tumor-cell-co-cultured NK cells exhibited a decidual-like status, as evidenced by remarkable increasing CD9 expression. Functional experiments finally revealed that NK cells exhibited tumor-activating characteristics by promoting the dissociation of SCF (stem cell factor) on the tumor cells membrane depending on cell-to-cell interaction, as the supernatant of the co-culture system enhanced tumor progression. ConclusionTogether, our findings revealed a population of protumorigenic NK cells that may be exploited for novel therapeutic strategies to improve therapeutic outcomes for patients with CCLM.
- organism: human
- assay: scRNA-seq
- assay: spatial transcriptomics
- assay: bulk RNA-seq
- research focus: cell type annotation
- research focus: differential expression
- research focus: cell-cell communication
- approach: deep learning
- approach: statistical model
- Citations
- 18
- FWCI
- 2.69
- Field percentile
- top 10%
Reproducibility ledger
Nobody has reported trying to reproduce this paper yet. Did you replicate an experiment or run the code? Your report saves the next lab a week.
Sign in to file a reproducibility report.
Related papers
- Conventional NK cells and tissue-resident ILC1s join forces to control liver metastasis
L. Ducimetiere, G. Lucchiari, … S. Tugues·bioRxiv·Jul 17, 2020
- Hepatic iNKT cells facilitate colorectal cancer metastasis by inducing a fibrotic niche in the liver
Marc Nater, Michael David Brügger, … Maries F. van den Broek·iSciencePeer-reviewed·Apr 8, 2025
- Rapid establishment of a tumor-retained state curtails the contribution of conventional NK cells to anti-tumor immunity in solid cancers
I. W. Dean, C. Y. Lee, … D. R. Withers·bioRxiv·Aug 10, 2023
- A new highly-specific Natural Killer cell-specific gene signature predicting recurrence in colorectal cancer patients.
C. Shembrey, C. Behrenbruch, … F. Hollande·bioRxiv·Apr 29, 2022
- CD39 defines a cytotoxic tumor-associated NK cell state responsive to NKG2A blockade in lung cancer
Clara Serger, Lucas Rebuffet, … Alfred Zippelius·bioRxiv·Aug 26, 2025
- Syngeneic natural killer cell therapy activates dendritic and T cells in metastatic lungs and effectively treats low-burden metastases
Shih‐Wen Huang, Yein‐Gei Lai, … Nan‐Shih Liao·eLifePeer-reviewed·Jun 19, 2024