bioRxivBioinformaticsPreprint
Identification of biomarkers and candidate inhibitors for multiple myeloma
Abstract
Multiple myeloma (MM) is a plasma cell malignancy that causes the overabundance of monoclonal paraprotein (M protein) and organ damages. In our study, we aim to identify biological markers and processes of MM using a bioinformatics method to elucidate their potential pathogenesis. The gene expression profiles of the GSE153626 datasets were originally produced by using the high-throughput Illumina HiSeq 4000 (Mus musculus). The functional categories and biochemical pathways were identified and analyzed by the Kyoto Encyclopedia of Genes and Genomes pathway (KEGG), Gene Ontology (GO), and Reactom enrichment. KEGG and GO results showed the biological pathways related to immune dysfunction and signal transduction are mostly affected in the development of MM. Moreover, we identified several genes including Gngt2, Foxp3, and Cd3g were involved in the regulation of immune cells. We further predicted new inhibitors that have the ability to block the progression of MM based on the L1000fwd analysis. Therefore, this study provides further insights into the underlying pathogenesis of MM.
- organism: mouse
- assay: bulk RNA-seq
- research focus: differential expression
- approach: statistical model
- Citations
- 9
Reproducibility ledger
Nobody has reported trying to reproduce this paper yet. Did you replicate an experiment or run the code? Your report saves the next lab a week.
Sign in to file a reproducibility report.
Related papers
- Identification of candidate therapeutics and signaling pathways for multiple myeloma
Hanming Gu·bioRxiv·Nov 3, 2021
- Identification of biomarkers and candidate regulators for multiple myeloma under the knockout of AURKA
- Identification of potential biomarkers or therapeutic targets of mesenchymal stem cells in multiple myeloma by bioinformatics analysis.
Zhiran Li, Wen-Ke Cai, … Gong‐Hao He·bioRxiv·Jun 16, 2020
- Stage-specific gene ratios highlight genes and mechanisms related to presymptomatic and symptomatic Multiple Myeloma
Grigoris Georgiou, George Minadakis, … George M. Spyrou·bioRxiv·Nov 4, 2024
- Revised International Staging System (R-ISS) stage-dependent analysis uncovers oncogenes and potential immunotherapeutic targets in multiple myeloma
- Longitudinal multi-omic profiling uncovers immune escape and predictors of response in multiple myeloma
Denis J. Ohlstrom, William Pilcher, … Manoj Bhasin·bioRxiv·May 27, 2025