bioRxivBioengineering
Renal tubular function and morphology revealed in kidney without labeling using three-dimensional dynamic optical coherence tomography
P. Mukherjee, S. Fukuda, D. Lukmanto, T. H. Tran, K. Okada, S. Makita, I. A. El-Sadek, Y. Lim, Y. Yasuno
Abstract
Renal tubule has distinct metabolic features and functional activity that may be altered during kidney disease. In this paper, we present label-free functional activity imaging of renal tubule in normal and obstructed mouse kidney models using three-dimensional (3D) dynamic optical coherence tomography (OCT) ex vivo. To create an obstructed kidney model, we ligated the ureter of the left kidney for either 7 or 14 days. Two different dynamic OCT (DOCT) methods were implemented to access the slow and fast activity of the renal tubules: a logarithmic intensity variance (LIV) method and a complex-correlation-based method. Three-dimensional DOCT data were acquired with a 1.3 m swept-source OCT system and repeating raster scan protocols. In the normal kidney, the renal tubule appeared as a convoluted pipe-like structure in the DOCT projection image. Such pipe-like structures were not observed in the kidneys subjected to obstruction of the ureter for several days. Instead of any anatomical structures, a superficial high dynamics appearance was observed in the perirenal cortex region of the obstructed kidneys. These findings suggest that volumetric DOCT can be used as a tool to investigate kidney function during kidney diseases.
- organism: mouse
- assay: imaging
- research focus: cell type annotation
- research focus: spatial domain detection
- approach: microscopy & imaging analysis
Reproducibility ledger
Nobody has reported trying to reproduce this paper yet. Did you replicate an experiment or run the code? Your report saves the next lab a week.
Sign in to file a reproducibility report.
Related papers
- Real-Time Viability Assessment of Ex Vivo Mouse Kidneys for Transplant Applications Using Dynamic Optical Coherence Tomography
Ke Zhang, Feng Yan, … Qinggong Tang·bioRxiv·Aug 30, 2025
- Modelling Glomerular Filtration using Multispectral Optoacoustic Tomography and a Novel Near-infrared Dye
James Littlewood, Rachel Harwood, … Patricia A. Murray·bioRxiv·May 31, 2025
- TNFα and Endothelial IL-1 Receptor Signaling Drive Peritubular Capillary Regression and Fibrosis in Obstructive Kidney Injury
Charmain F. Johnson, Kate Wheeler, … Courtney T. Griffin·bioRxiv·Dec 31, 2025
- Transport activity regulates mitochondrial bioenergetics and biogenesis in renal tubules
C.-J. Cheng, J. M. Nizar, … C.-L. Huang·bioRxiv·Feb 4, 2024
- Label-Free Optical Biopsy Reveals Biomolecular and Morphological Features of Diabetic Kidney Tissue in 2D and 3D
Anthony A. Fung, Zhi Li, … Lingyan Shi·Nature CommunicationsPeer-reviewed·May 15, 2025
- High-Resolution 3D Histology of the Murine Kidney Using Synchrotron X-Ray Micro-CT
Humberto Cavalcante Joca, Pablo Aguiar Silva, … Thayná Mendonça Avelino·bioRxiv·Feb 14, 2026