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BioinformaticsNature Methods
Peer-reviewed journal article

LazySlide: accessible and interoperable whole slide image analysis

Yimin ZhengiD, Ernesto AbilaiD, Eva ChrenkováiD, Iva BuljaniD, Juliane WinkleriD, André F. RendeiroiD

Abstract

Histopathological data are foundational in both biological research and clinical diagnostics but remain siloed from modern multimodal and single-cell frameworks. We introduce LazySlide, an open-source Python package built on the scverse ecosystem for efficient whole-slide image (WSI) analysis and multimodal integration. By leveraging vision-language foundation models and adhering to scverse data standards, LazySlide bridges histopathology with omics workflows. It supports tissue and cell segmentation, feature extraction, cross-modal querying, and zero-shot classification, with minimal setup. Its modular design empowers both novice and expert users, lowering the barrier to advanced histopathology analysis and accelerating AI-driven discovery in tissue biology and pathology.

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