LazySlide: accessible and interoperable whole slide image analysis
Yimin ZhengiD, Ernesto AbilaiD, Eva ChrenkováiD, Iva BuljaniD, Juliane WinkleriD, André F. RendeiroiD
Abstract
Histopathological data are foundational in both biological research and clinical diagnostics but remain siloed from modern multimodal and single-cell frameworks. We introduce LazySlide, an open-source Python package built on the scverse ecosystem for efficient whole-slide image (WSI) analysis and multimodal integration. By leveraging vision-language foundation models and adhering to scverse data standards, LazySlide bridges histopathology with omics workflows. It supports tissue and cell segmentation, feature extraction, cross-modal querying, and zero-shot classification, with minimal setup. Its modular design empowers both novice and expert users, lowering the barrier to advanced histopathology analysis and accelerating AI-driven discovery in tissue biology and pathology.
02 /Specification & Classification
Click any tag to browse matching papers- Citations
- 5
- FWCI
- 10.19
- Field percentile
- top 2%
- Assay
- Research Focus
- Approach
Reproducibility ledger
Nobody has reported trying to reproduce this paper yet. Did you replicate an experiment or run the code? Your report saves the next lab a week.
Sign in to file a reproducibility report.
Related papers
- WSInsight: a cloud-native, agent-callable platform for single-cell whole-slide pathology
Chao-Hui Huang, Oluwamayowa Awosika, Diane R. Fernandez·bioRxiv·May 17, 2026
- Histolytics: A Panoptic Spatial Analysis Framework for Interpretable Histopathology
Oskari Lehtonen, Niko K Nordlund, … Sampsa Hautaniemi·Computational and Structural Biotechnology JournalPeer-reviewed·Jan 1, 2025
- PyHIST: A Histological Image Segmentation Tool
Manuel Muñoz-Aguirre, Vasilis F. Ntasis, … Roderic Guigó·PLoS Computational BiologyPeer-reviewed·Oct 19, 2020
- An integrative web-based software tool for multi-dimensional pathology whole-slide image analytics
Alice Shen, Fusheng Wang, … Jun Kong·Physics in Medicine and BiologyPeer-reviewed·Sep 6, 2022
- Weakly Supervised Vector Quantization for Whole Slide Image Classification
Dawei Shen, Yaozhong Zhang, Seiya Imoto·International Conference on Bioinformatics and Computational Biology (ICBCB)Peer-reviewed·Feb 27, 2025
- AnnotateAnyCell: Open-Source AI Framework for Efficient Annotation in Digital Pathology
Shourya Verma, Aditya Malusare, … Nadia A. Lanman·bioRxiv·Nov 2, 2025