High-Quality PacBio Genome Assembly of Populus alba L. Villafranca
Iqra Sarfraz, Andrea ZuccoloiD, Mirko CeliiiD, Alessandra FranciniiD, Rod A. WingiD, Luca SebastianiiD
Abstract
This study presents the high-quality genome assemblies for Populus alba L. "Villafranca" using PacBio HiFi sequencing. The assembly span 498.95 Mb, an N50 of 18.18 Mb and largest contig of 52.03 Mb. BUSCO analysis revealed genome completeness (embryophyta_odb10) with 98.8% of the 1,614 BUSCO groups searched. The Transposable element and repetitive content accounted for [~]31.37%. The comparison of P. alba and P. trichocarpa genomes identified 9,741 structural variants (SVs) This comprehensive analysis provides valuable resources for studying poplar genome evolution, domestication, and genetic improvement, underscoring the utility of long-read sequencing for resolving complex genomic features.
02 /Specification & Classification
Click any tag to browse matching papers- Citations
- 1
- Organism
- Assay
- Research Focus
- Approach
Reproducibility ledger
Nobody has reported trying to reproduce this paper yet. Did you replicate an experiment or run the code? Your report saves the next lab a week.
Sign in to file a reproducibility report.
Related papers
- Chromosomal-level genome assembly of Populus davidiana
Liyang Chen, Yuanzhong Jiang, … Jing Wang·bioRxiv·Jul 11, 2023
- The draft nuclear genome assembly of Eucalyptus pauciflora: new approaches to comparing de novo assemblies
Weiwen Wang, Ashutosh Das, … Robert Lanfear·GigaSciencePeer-reviewed·Jan 1, 2020
- Chromosomal-level genome assembly of Populus adenopoda
- Hybrid origin of Populus tomentosa Carr. identified through genome sequencing and phylogenomic analysis
Xinmin An, Kai Gao, … Steven H. Strauss·bioRxiv·Apr 7, 2020
- Improvements in the Sequencing and Assembly of Plant Genomes
Priyanka Sharma, Othman Al‐Dossary, … Robert James Henry·GigabytePeer-reviewed·Jun 10, 2021
- Chromosome-level genome assembly of macroalgae Gracilariopsis lemaneiformis
Yiyi Hu, Youtao Huang, … Zhenghong Sui·bioRxiv·Apr 30, 2026