Andrea Zuccolo

The paper profiles the metabolome and genomes of five amaranth cultivars to assess nutritional quality and genetic differences.

The paper presents high-quality genome assemblies for two olive cultivars using PacBio HiFi sequencing, revealing structural differences in genes related to salt stress.

This study presents a high-quality genome assembly of Populus alba L. Villafranca using PacBio HiFi sequencing, revealing structural variants and genomic features.

The paper presents 11 new chromosome-level genome assemblies of Oryza species, revealing core genome conservation and subgenome plasticity, and highlights implications for crop improvement.

The paper identifies a CLAMT1 gene responsible for strigolactone production and Striga susceptibility in pearl millet by comparing genome assemblies of susceptible and resistant lines.

The paper presents an HPC-based workflow for genome variant calling using GATK, demonstrating SNP detection in four plant species and identifying novel SNPs in rice.

The paper constructs a pan-genome inversion index for Asian rice using 16 genomes and finds a high inversion rate with functional implications.

The paper presents two gap-free rice genomes, revealing centromere structure and gene expression insights.

The paper generates 12 new high-quality rice reference genomes to expand the genetic diversity coverage of cultivated rice, forming a comprehensive pan-genome resource with 16 reference sequences.