bioRxivBiophysics
Environmentally controlled curvature of single collagen proteins
Abstract
The predominant structural protein in vertebrates is collagen, which plays a key role in extracellular matrix and connective tissue mechanics. Despite its prevalence and physical importance in biology, the mechanical properties of molecular collagen are far from established. The flexibility of its triple helix is unresolved, with descriptions from different experimental techniques ranging from flexible to semirigid. Furthermore, it is unknown how collagen type (homo-vs. heterotrimeric) and source (tissue-derived vs. recombinant) influence flexibility. Using SmarTrace, a chain tracing algorithm we devised, we performed statistical analysis of collagen conformations collected with atomic force microscopy (AFM) to determine the proteins mechanical properties. Our results show that types I, II and III collagens - the key fibrillar varieties - exhibit molecular flexibilities that are very similar. However, collagen conformations are strongly modulated by salt, transitioning from compact to extended as KCl concentration increases, in both neutral and acidic pH. While analysis with a standard worm-like chain model suggests that the persistence length of collagen can attain almost any value within the literature range, closer inspection reveals that this modulation of collagens conformational behaviour is not due to changes in flexibility, but rather arises from the induction of curvature (either intrinsic or induced by interactions with the mica surface). By modifying standard polymer theory to include innate curvature, we show that collagen behaves as an equilibrated curved worm-like chain (cWLC) in two dimensions. Analysis within the cWLC model shows that collagens curvature depends strongly on pH and salt, while its persistence length does not. Thus, we find that triple-helical collagen is well described as semiflexible, irrespective of source, type, pH and salt environment. These results demonstrate that collagen is more flexible than its conventional description as a rigid rod, which may have implications for its cellular processing and secretion.
- assay: ATAC-seq
- assay: Hi-C
- assay: DNA methylation
- assay: whole-genome sequencing
- research focus: chromatin & epigenetic regulation
- research focus: protein folding & dynamics
- approach: experimental assay
- approach: statistical model
Reproducibility ledger
Nobody has reported trying to reproduce this paper yet. Did you replicate an experiment or run the code? Your report saves the next lab a week.
Sign in to file a reproducibility report.
Related papers
- Sequence-dependent mechanics of collagen reflect its structural and functional organization
A. Al-Shaer, A. Lyons, … N. R. Forde·bioRxiv·Sep 27, 2020
- The Molecular Origin of Water-Mediated Collagen Contraction
James Preston Rowe, Peter Fratzl, … Ulrich Hansen·bioRxiv·Mar 29, 2026
- Molecular dynamics simulations reveal a mechanism of calcium homeostasis driving homotrimerisation and heterotrimerization of type I collagen
Emily Johnson, João Victor de Souza, … Elizabeth G. Canty‐Laird·bioRxiv·Apr 3, 2025
- Chemical bonds in collagen rupture selectivelyunder tensile stress
James Preston Rowe, Konstantin Röder·Physical Chemistry Chemical PhysicsPeer-reviewed·Dec 22, 2022
- Mechanical cues of an interpenetrating polysaccharide matrix regulate self-assembly of collagen fibers
Fatemeh Tavakoli Joorabi, Nicholas J. Derr, … Kyle H. Vining·Science AdvancesPeer-reviewed·Sep 2, 2026
- Tuning non-linear mechanics in collagen hydrogels modulates three dimensional cellular morphotypes
M. A. Enriquez Martinez, Z. Wang, … A. E. Rowan·bioRxiv·Mar 18, 2024