Emily Johnson

reactifpTM reimplements actifpTM to calculate interface quality scores using standard outputs from model prediction software, showing strong correlation with actifpTM on a PDB dataset.

This study uses molecular dynamics simulations to show how calcium ions influence the formation of hetero- and homotrimers of type I collagen, explaining the conditions under which homotrimers form.

The paper profiles extracellular vesicle cargo in plasma and synovial fluid of an equine osteoarthritis model using multi-omic approaches and identifies time-dependent changes in protein and RNA content.

This study quantifies changes in synovial fluid extracellular vesicle proteomes after MSC treatment in equine osteoarthritis, identifying differentially expressed proteins and enriched pathways.

The paper curates a database of senescence-associated genes and performs systems biology analyses to identify novel regulators and pathways of cellular senescence.

This paper updates the Human Ageing Genomic Resources (HAGR), presenting its five databases and their functionalities for studying ageing and longevity.