Advances in Geometric Techniques for Analyzing Blebbing in Chemotaxing Dictyostelium Cells
Abstract
We present a technical platform that allows us to monitor and measure cortex and membrane dynamics during bleb-based chemotaxis. Using D. discoideum cells expressing LifeAct-GFP and crawling under agarose containing RITC-dextran, we were able to simultaneously visualize the actin cortex and the cell membrane throughout bleb formation. Using these images, we then applied edge detect to generate points on the cell boundary with coordinates in a coordinate plane. Then we fitted these points to a curve with known x and y coordinate functions. The result was to parameterize the cell outline. With the parameterization, we demonstrate how to compute data for geometric features such as cell area, bleb area and edge curvature. This allows us to collect vital data for the analysis of blebbing.
02 /Specification & Classification
Click any tag to browse matching papers- Organism
- Assay
- Research Focus
- Approach
Reproducibility ledger
Nobody has reported trying to reproduce this paper yet. Did you replicate an experiment or run the code? Your report saves the next lab a week.
Sign in to file a reproducibility report.
Related papers
- A bleb initiation model for chemotaxis suggests a role for myosin II clusters and cortex rupture
E. O. Asante-Asamani, D. Grange, … D. Brazill·bioRxiv·Mar 16, 2020
- A mathematical model for bleb expansion clarifies the role of TalA in regulating blebbing
Sobana Handi Dinuka Sewwandi de Silva, Emily Movsumova, … Derrick T. Brazill·bioRxiv·Feb 28, 2025
- Modeling the dynamics of actin and myosin during bleb stabilization
E. O. Asante-Asamani, M. Dalton, … W. Strychalski·bioRxiv·Oct 26, 2023
- A novel Fiji/ImageJ plugin for the rapid analysis of blebbing cells
K. W. Vosatka, S. B. Lavenus, J. S. Logue·bioRxiv·Jun 4, 2021
- Predicting nucleation sites in chemotaxing Dictyostelium discoideum
E. O. Asante-Asamani, D. Rawal, … J. Loustau·bioRxiv·Mar 1, 2019
- Actin turnover required for adhesion-independent bleb migration
C. Copos, W. Strychalski·bioRxiv·Apr 1, 2022