bioRxivBioengineering
Spherical Echo-Planar Time-resolved Imaging (sEPTI) for rapid 3D quantitative T2* and Susceptibility imaging
N. Wang, C. Liao, X. Cao, M. Nishimura, Y. Brackenier, M. Yurt, M. Gao, D. Abraham, C. Alkan, S. S. Iyer, Z. Zhou, A. Kerr, J. Haldar, K. Setsompop
Abstract
PurposeTo develop a 3D spherical EPTI (sEPTI) acquisition and a comprehensive reconstruction pipeline for rapid high-quality whole-brain submillimeter T2* and QSM quantification. MethodsFor the sEPTI acquisition, spherical k-space coverage is utilized with variable echo-spacing and maximum kx ramp-sampling to improve efficiency and incoherency when compared to existing EPTI approaches. For reconstruction, an iterative rank-shrinking B0 estimation and odd-even high-order phase correction algorithms were incorporated into the reconstruction to better mitigate artifacts from field imperfections. A physics-informed unrolled network was utilized to boost the SNR, where 1-mm and 0.75-mm isotropic whole-brain imaging were performed in 45 and 90 seconds, respectively. These protocols were validated through simulations, phantom, and in vivo experiments. Ten healthy subjects were recruited to provide sufficient data for the unrolled network. The entire pipeline was validated on additional 5 healthy subjects where different EPTI sampling approaches were compared. Two additional pediatric patients with epilepsy were recruited to demonstrate the generalizability of the unrolled reconstruction. ResultssEPTI achieved 1.4 x faster imaging with improved image quality and quantitative map precision compared to existing EPTI approaches. The B0 update and the phase correction provide improved reconstruction performance with lower artifacts. The unrolled network boosted the SNR, achieving high-quality T2* and QSM quantification with single average data. High-quality reconstruction was also obtained in the pediatric patient using this network. ConclusionsEPTI achieved whole-brain distortion-free multi-echo imaging and T2* and QSM quantification at 0.75 mm in 90 seconds which has the potential to be useful for wide clinical applications.
- organism: human
- assay: imaging
- research focus: dimensionality reduction
- approach: deep learning
- approach: transformer / foundation model
Reproducibility ledger
Nobody has reported trying to reproduce this paper yet. Did you replicate an experiment or run the code? Your report saves the next lab a week.
Sign in to file a reproducibility report.
Related papers
- Single-shot Echo Planar Time-resolved Imaging for multi-echo functional MRI and distortion-free diffusion imaging
Z. Dong, L. L. Wald, … F. Wang·bioRxiv·Jan 24, 2024
- 3D Echo Planar Time-resolved Imaging (3D-EPTI) for ultrafast multi-parametric quantitative MRI
F. Wang, Z. Dong, … K. Setsompop·bioRxiv·May 6, 2021
- Simultaneous pure T2 and varying T2'-weighted BOLD fMRI using Echo Planar Time-resolved Imaging for mapping cortical-depth dependent responses
Fuyixue Wang, Zijing Dong, … Kawin Setsompop·NeuroImagePeer-reviewed·Oct 14, 2021
- SNR-efficient distortion-free diffusion relaxometry imaging using ACcelerated Echo-train shifted EPTI (ACE-EPTI)
Z. Dong, F. Wang, … K. Setsompop·bioRxiv·Aug 27, 2021
- Temporal signal-to-noise changes in combined multiband- and slice-accelerated echo-planar imaging with a 20- and 64-channel coil
Philipp Seidel, Seth M. Levine, … Jens Volkmar Schwarzbach·Scientific ReportsPeer-reviewed·Mar 26, 2020
- Romer-EPTI: rotating-view motion-robust super-resolution EPTI for SNR-efficient distortion-free in-vivo mesoscale dMRI and microstructure imaging
Z. Dong, T. G. Reese, … F. Wang·bioRxiv·Jan 26, 2024