bioRxivSynthetic BiologyPreprint
Dual-function logic gates based on CRISPRi
Abstract
Developing logic gate circuits that are programmable and reliable for specific functions is a central goal in synthetic biology. Traditional synthetic circuits often rely on protein regulators, which face scalability and resource burden limitations. To overcome these challenges, we introduce a novel approach utilizing dual-function and multi-level logic gates based on the CRISPRi system with dCas9 and sgRNA. This method, implemented in an in vitro transcription system, enables the rapid design and validation of complex logic gates. Our dual-function and multi-level design strategies achieve robust functionality in NOR, NAND, AND, and OR gates, allowing different logic outputs by altering only the inputs while reusing all other modules. This showcases significant advancements in efficiency and scalability for synthetic circuit construction. This work reduces development time and simplifies circuit design, paving the way for more efficient synthetic biology applications.
- Citations
- 1
Reproducibility ledger
Nobody has reported trying to reproduce this paper yet. Did you replicate an experiment or run the code? Your report saves the next lab a week.
Sign in to file a reproducibility report.
Related papers
- CRISPRi-based circuits for genetic computation in plants
Muhammad Adil Khan, Gabrielle Herring, … Ryan Lister·bioRxiv·Jul 1, 2022
- CRISPR interference as low burden logic inverters in synthetic circuits: characterization and tuning
Massimo Bellato, Angelica Frusteri Chiacchiera, … Lorenzo Pasotti·Frontiers in Bioengineering and BiotechnologyPeer-reviewed·Jan 28, 2022
- Multistable and dynamic CRISPRi-based synthetic circuits
Javier Santos‐Moreno, Eve Tasiudi, … Yolanda Schaerli·Nature CommunicationsPeer-reviewed·Jun 2, 2020
- Robust digital logic circuits in eukaryotic cells with CRISPR/dCas9 NOR gates
Miles W. Gander, Justin D. Vrana, … Eric Kalvins·bioRxiv·Mar 2, 2016
- SYNTHETIC CIRCUITS BASED ON SPLIT CAS9 TO DETECT CELLULAR EVENTS
Alicja Przybyszewska-Podstawka, Jakub Czapiński, … Adolfo Rivero‐Müller·Scientific ReportsPeer-reviewed·Sep 11, 2023
- Overcoming leak sensitivity in CRISPRi circuits using antisense RNA sequestration and regulatory feedback
David A. Specht, Louis B. G. Cortes, Guillaume Lambert·ACS Synthetic BiologyPeer-reviewed·Aug 26, 2022