CAGEfightR: Cap Analysis of Gene Expression (CAGE) in R/Bioconductor
Malte ThodbergiD, Axel ThieffryiD, Kristoffer Vitting‐SeerupiD, Robin AnderssoniD, Albin SandeliniD
Abstract
We developed the CAGEfightR R/Biconductor-package for analyzing CAGE data. CAGEfightR allows for fast and memory efficient identification of transcription start sites (TSSs) and predicted enhancers. Downstream analysis, including annotation, quantification, visualization and TSS shape statistics are implemented in easy-to-use functions. The package is freely available at https://bioconductor.org/packages/CAGEfightR
02 /Specification & Classification
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