Mazdak Salavati

The paper presents a reusable TWAS workflow for cattle to identify gene-trait associations using GWAS and transcriptomic data, improving variant calling and detecting novel associations.

This study uses multi-omics approaches to analyze how M. bovis infection reprograms the epigenome of bovine alveolar macrophages, identifying key genes and pathways involved in the host response.

The paper uses targeted NGS to identify functional SNPs and pathways associated with IBD in GSDs, revealing genetic markers for treatment response.

This paper discusses the adoption of Nextflow and nf-core frameworks to standardize bioinformatics pipelines, improving collaboration and interoperability across research communities.

The paper annotates transcription start sites and enhancers in cattle using CAGE sequencing across multiple tissues and populations to improve genome annotation and inform breeding programs.

The paper profiles open chromatin in developing pig muscle to identify regulatory regions and provides a resource for genome regulation studies and variant filtering in pig breeding.

The paper compares genomic sequences of SARS-CoV-2, bat-CoV, and pangolin-CoV to identify host-associated divergences and high-impact variants.

This study investigates genetic variation in bTB resistance in Bos indicus cattle in Cameroon using genomic analysis and heritability studies.

The paper performs a global analysis of transcription start sites (TSS) in the ovine reference genome using CAGE sequencing, identifying novel TSS and validating them with bisulfite sequencing.

This study develops an unbiased pipeline for allele-specific expression analysis in sheep, revealing pervasive and tissue-specific allelic imbalance across genes and SNVs.

The paper creates a gene expression atlas for goats, identifying transcriptional differences in immune signatures compared to sheep.

This study characterizes gene expression changes in the gastrointestinal tract of sheep from birth to adulthood, identifying developmental stage-specific differences, particularly in the rumen complex and immune-related genes.