Structural genomics and interactomics of 2019 Wuhan novel coronavirus, 2019-nCoV, indicate evolutionary conserved functional regions of viral proteins
Hongzhu CuiiD, Ziyang GaoiD, Ming LiuiD, Senbao LuiD, Mo SuniD, Winnie Wezi MkandawireiD, Oleksandr NarykoviD, Suhas SrinivasaniD, Dmitry KorkiniD
Abstract
During its first month, the recently emerged 2019 Wuhan novel coronavirus (2019-nCoV) has already infected many thousands of people in mainland China and worldwide and took hundreds of lives. However, the swiftly spreading virus also caused an unprecedentedly rapid response from the research community facing the unknown health challenge of potentially enormous proportions. Unfortunately, the experimental research to understand the molecular mechanisms behind the viral infection and to design a vaccine or antivirals is costly and takes months to develop. To expedite the advancement of our knowledge we leverage the data about the related coronaviruses that is readily available in public databases, and integrate these data into a single computational pipeline. As a result, we provide a comprehensive structural genomics and interactomics road-maps of 2019-nCoV and use these information to infer the possible functional differences and similarities with the related SARS coronavirus. All data are made publicly available to the research community at http://korkinlab.org/wuhan
02 /Specification & Classification
Click any tag to browse matching papers- Citations
- 15
- Assay
- Research Focus
- Approach
Reproducibility ledger
Nobody has reported trying to reproduce this paper yet. Did you replicate an experiment or run the code? Your report saves the next lab a week.
Sign in to file a reproducibility report.
Related papers
- COVID-19: Viral-host interactome analyzed by network based-approach model to study pathogenesis of SARS-CoV-2 infection.
Francesco Messina, Emanuela Giombini, … Nicola Segata·Journal of Translational MedicinePeer-reviewed·Jun 10, 2020
- CoV3D: A database and resource for high resolution coronavirus protein structures
R. Gowthaman, J. D. Guest, … B. G. Pierce·bioRxiv·May 12, 2020
- Structure of nonstructural protein 1 from SARS-CoV-2.
L. K. Clark, T. J. Green, C. M. Petit·bioRxiv·Nov 3, 2020
- Comprehensive analysis of the host-virus interactome of SARS-CoV-2
Zhen Chen, Chao Wang, … Junjie Chen·bioRxiv·Dec 31, 2020
- Exploring the coronavirus epidemic using the new WashU Virus Genome Browser
Jennifer A. Flynn, Deepak Purushotham, … Ting Wang·Nature GeneticsPeer-reviewed·Sep 9, 2020
- SARS-CoV-2 structural coverage map reveals state changes that disrupt host immunity
Sean I O’Donoghue, Andrea Schafferhans, … Burkhard Rost·bioRxiv·Jul 16, 2020