Parallel sequencing lives, or what makes large sequencing projects successful
Javier QuileziD, Enrique VidaliD, François Le DilyiD, François SerraiD, Yasmina CuarteroiD, Ralph StadhoudersiD, Thomas GrafiD, Marc A. Martı́-RenomiD, Miguel BeatoiD, Guillaume J. P. FilioniD
Abstract
T47D_rep2 and b1913e6c1_51720e9cf were two Hi-C samples. They were born and processed at the same time, yet their fates were very different. The life of b1913e6c1_51720e9cf was simple and fruitful, while that of T47D_rep2 was full of accidents and sorrow. At the heart of these differences lies the fact that b1913e6c1_51720e9cf was born under a lab culture of Documentation, Automation, Traceability, Autonomy and compliance with the FAIR Principles. Their lives are a lesson for those who wish to embark on the journey of managing high throughput sequencing data.
02 /Specification & Classification
Click any tag to browse matching papers- Citations
- 6
- FWCI
- 3.05
- Field percentile
- top 7%
- Assay
Reproducibility ledger
Nobody has reported trying to reproduce this paper yet. Did you replicate an experiment or run the code? Your report saves the next lab a week.
Sign in to file a reproducibility report.
Related papers
- Ten simple rules for managing high-throughput nucleotide sequencing data
Rutger A. Vos·bioRxiv·Apr 19, 2016
- HTSQualC is a Flexible and One-Step Quality Control Software for High-throughput Sequencing Data Analysis
Renesh H. Bedre, Carlos Augusto Avila, Kranthi Kiran Mandadi·Scientific ReportsPeer-reviewed·Sep 21, 2021
- The sum of two halves may be different from the whole. Effects of splitting sequencing samples across lanes.
Eleanor C Williams, Ruben Chazarra-Gil, … Irina I Mohorianu·GenesPeer-reviewed·Dec 1, 2022
- Removing unwanted variation between samples in Hi-C experiments
Kipper Fletez‐Brant, Yunjiang Qiu, … Kasper D. Hansen·Briefings in BioinformaticsPeer-reviewed·Mar 27, 2024
- Broom: Application for non-redundant storage of High Throughput Sequencing data
Levent Albayrak, Kamil Khanipov, … Yuriy Fofanov·BioinformaticsPeer-reviewed·Jul 13, 2018
- ARSDA: A new approach for storing, transmitting and analyzing high-throughput sequencing data
Xuhua Xia·G3 Genes Genomes GeneticsPeer-reviewed·Oct 27, 2017