Nature CommunicationsBioinformaticsPeer-reviewed journal article
Metabolic Reaction Network-based Recursive Metabolite Identification for Untargeted Metabolomics
Xiaotao SheniD, Ruohong Wang, Xin Xiong, Yandong YiniD, Yuping A. CaiiD, Zaijun MaiD, Nan LiuiD, Zheng‐Jiang ZhuiD
- Citations
- 367
- FWCI
- 12.57
- Field percentile
- top 1%
Abstract
Metabolite identification is a long-standing challenge in untargeted metabolomics and a major hurdle for functional metabolomics studies. Here, we developed a metabolic reaction network-based recursive algorithm and webserver called MetDNA for the large-scale and unambiguous identification of metabolites (available at http://metdna.zhulab.cn). We showcased the versatility of our workflow using different instrument platforms, data acquisition methods, and biological sample types and demonstrated that over 2,000 metabolites could be identified from one experiment.
Reproducibility ledger
Nobody has reported trying to reproduce this paper yet. Did you replicate an experiment or run the code? Your report saves the next lab a week.
Sign in to file a reproducibility report.
Related papers
- Metabolite discovery through global annotation of untargeted metabolomics data
Li Chen, Wenyun Lu, … Joshua D. Rabinowitz·Nature MethodsPeer-reviewed·Oct 28, 2021
- Metabolite annotation from knowns to unknowns through knowledge-guided multi-layer metabolic network
Zhiwei Zhou, Mingdu Luo, … Zheng‐Jiang Zhu·bioRxiv·Jun 2, 2022
- Metabolome Identification by Systematic Stable Isotope Labeling Experiments and False Discovery Analysis with a Target-Decoy Strategy
Drew R. Jones, Xusheng Wang, … Junmin Peng·bioRxiv·Nov 26, 2016
- DIMEdb: an integrated database and web service for metabolite identification in direct infusion mass spectrometery
Keiron O’Shea, Divya Kattupalli, … Chuan Lu·bioRxiv·Mar 30, 2018
- Identification and Integration of Key-Metabolic Reactions from Untargeted Metabolomics
Nikolai Köhler, Vivian Würf, … Josch Konstantin Pauling·bioRxiv·May 15, 2023
- MassID provides near complete annotation of metabolomics data with identification probabilities
Ethan Stancliffe, Monil Gandhi, … Gary J. Patti·bioRxiv·Feb 14, 2026