Effective mechanical potential of cell-cell interaction in tissues harboring cavity and in cell sheet toward morphogenesis
H. Koyama, H. Okumura, T. Otani, A. M. Ito, K. Nakamura, K. Kato, T. Fujimori
Abstract
Measuring mechanical forces of cell-cell interactions is important for studying morphogenesis in multicellular organisms. We previously reported an image-based statistical method for inferring effective mechanical potentials of pairwise cell-cell interactions by fitting cell tracking data with a theoretical model. However, whether this method is applicable to tissues with non-cellular components such as cavities remains elusive. Here we evaluated the applicability of the method to cavity-harboring tissues. Using synthetic data generated by simulations, we found that the effect of expanding cavities was added to the pregiven potentials used in the simulations, resulting in the inferred effective potentials having an additional repulsive component derived from the expanding cavities. Interestingly, simulations by using the effective potentials reproduced the cavity-harboring structures. Then, we applied our method to the mouse blastocysts, and found that the inferred effective potentials can reproduce the cavity-harboring structures. Pairwise potentials with additional repulsive components were also detected in two-dimensional cell sheets, by which curved sheets including tubes and cups were simulated. We conclude that our inference method is applicable to tissues harboring cavities and cell sheets, and the resultant effective potentials are useful to simulate the morphologies.
02 /Specification & Classification
Click any tag to browse matching papers- Organism
- Assay
- Research Focus
- Approach
Reproducibility ledger
Nobody has reported trying to reproduce this paper yet. Did you replicate an experiment or run the code? Your report saves the next lab a week.
Sign in to file a reproducibility report.
Related papers
- Effective mechanical potential of cell-cell interaction explains three-dimensional morphologies during early embryogenesis
H. Koyama, H. Okumura, … T. Fujimori·bioRxiv·Jun 26, 2023
- Cell position-based evaluation of mechanical features of cells in multicellular systems
Hiroshi Koyama, Atsushi M Ito, … Toshihiko Fujimori·Journal of Theoretical BiologyPeer-reviewed·Feb 18, 2025
- PalaCell2D: A framework for detailed tissue morphogenesis
Raphaël Conradin, Christophe Coreixas, … Bastien Chopard B·Journal of Computational SciencePeer-reviewed·Apr 3, 2021
- In silico mechanobiochemical modeling of morphogenesis in cell monolayers
Bahador Marzban, Xiao Ma, … Hongyan Yuan·bioRxiv·Feb 13, 2018
- Mechanical properties of adherent cell sheets analyzed by deflection of supporting membrane
Yuri M. Efremov, А.М. Суббот, … Peter S. Timashev·European Biophysics JournalPeer-reviewed·Sep 29, 2025
- 3D Simulation of Tissue Mechanics with Cell Polarization
Steve Vincent Maurice Runser, Roman Vetter, Dagmar Iber·Nature Computational SciencePeer-reviewed·Apr 9, 2024