Gibbs Free Energy of Protein-Protein Interactions Correlates with ATP Production in Cancer Cells

Abstract

In this paper we analyze several cancer cell types from two seemingly independent angles: (a) the over-expression of various proteins participating in protein-protein interaction networks and (b) a metabolic shift from oxidative phosphorylation to glycolysis. We use large data sets to obtain a thermodynamic measure of the protein-protein interaction network, namely the associated Gibbs free energy. We find a reasonably strong inverse correlation between the percentage of energy production via oxidative phosphorylation and the Gibbs free energy of the protein networks. The latter is a measure of functional dysregulation within the cell. Our findings corroborate earlier indications that signaling pathway upregulation in cancer cells are linked to the metabolic shift known as the Warburg effect, hence these two seemingly independent characteristics of cancer phenotype may be interconnected.