Cancer Genome Interpreter Annotates The Biological And Clinical Relevance Of Tumor Alterations
D. Tamborero, C. Rubio-Perez, J. Deu-Pons, M. P. Schroeder, A. Vivancos, A. Rovira, I. Tusquets, J. Albanell, J. Rodon, J. Tabernero, C. de Torres, R. Dienstmann, A. Gonzalez-Perez, N. Lopez-Bigas
Abstract
While tumor genome sequencing has become widely available in clinical and research settings, the interpretation of tumor somatic variants remains an important bottleneck. Most of the alterations observed in tumors, including those in well-known cancer genes, are of uncertain significance. Moreover, the information on tumor genomic alterations shaping the response to existing therapies is fragmented across the literature and several specialized resources. Here we present the Cancer Genome Interpreter (http://www.cancergenomeinterpreter.org), an open access tool that we have implemented to annotate genomic alterations and interpret their possible role in tumorigenesis and in the response to anti-cancer therapies.
02 /Specification & Classification
Click any tag to browse matching papersReproducibility ledger
Nobody has reported trying to reproduce this paper yet. Did you replicate an experiment or run the code? Your report saves the next lab a week.
Sign in to file a reproducibility report.
Related papers
- Personal Cancer Genome Reporter: Variant Interpretation Report For Precision Oncology
Sigve Nakken, Ghislain Fournous, … Eivind J. Hovig·BioinformaticsPeer-reviewed·Dec 19, 2017
- Resources For Interpreting Variants In Precision Genomic Oncology Applications
Hsinyi Tsang, KanakaDurga Addepalli, Sean R. Davis·Frontiers in OncologyPeer-reviewed·Sep 19, 2017
- A Platform for Oncogenomic Reporting and Interpretation
Caralyn Reisle, Laura M. Williamson, … Steven J.M. Jones·Nature CommunicationsPeer-reviewed·Feb 9, 2022
- A harmonized meta-knowledgebase of clinical interpretations of cancer genomic variants
Alex Handler Wagner, Brian Walsh, … Adam A. Margolin·Nature GeneticsPeer-reviewed·Apr 1, 2020
- CancerVar: an Artificial Intelligence empowered platform for clinical interpretation of somatic mutations in cancer
- VarStack: a Web Tool for Data Retrieval to Interpret Somatic Variants in Cancer
Morgan Howard, Bruce Kane, … Ece Dilber Gamsiz Uzun·DatabasePeer-reviewed·Jan 1, 2020