bioRxivGenomicsPreprint
Distribution of GOPC:ROS1 and other ROS1 fusions in glioma types
Philipp SieversiD, Damian SticheliD, Martin SilliD, Daniel SchrimpfiD, Dominik SturmiD, Florian SeltiD, Jonas Ecker, Evelina MieleiD, Mariëtte E.G. KranendonkiD, Bastiaan B.J. TopsiD, Patricia Kohlhof‐Meinecke, Rudi BeschorneriD, Christof Maria KrammiD, Martin HasselblattiD, Guido ReifenbergeriD, David CapperiD, Pieter WesselingiD, Till MildeiD, Andrey KorshunoviD, Olaf WittiD, Stefan Michael PfisteriD, Wolfgang WickiD, Andreas von DeimlingiD, David JonesiD, Felix SahmiD
Abstract
The ROS proto-oncogene 1 (ROS1) gene is rearranged in various cancers. The translated fusion protein presents an attractive therapeutic target, since specific inhibitors have been approved for several tumor types. In glioma, ROS1 fusions are frequent within infantile hemispheric glioma, and single case reports on occurrences in other glioma types exist. However, a comprehensive analysis spanning the full width of glioma types and subtypes is lacking. We here assessed the spectrum and distribution of ROS1 fusions by screening >20,000 glioma cases for typical chromosomal alterations, with subsequent RNA-sequencing for confirmation of candidate cases. ROS1 fusions were identified in 16 cases, from low grade pilocytic astrocytoma WHO grade 1 to glioblastoma, IDH wildtype WHO grade 4. Thus, despite being enriched in some tumor types, ROS1 fusions are not pathognomonic for specific glioma types and may consitute a relevant target in a variety of cases.
- organism: human
- assay: bulk RNA-seq
- research focus: differential expression
- approach: statistical model
- Citations
- 1
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