bioRxivBioinformaticsPreprint
Identification of transcriptional landscapes and functions of the inhibition of ARHGEF2 in hepatocellular carcinoma cells
Abstract
The RHO guanine exchange factor ARHGEF2 has exchange activity toward RHOA, which is essential for the development of cancers such as liver cancer. However, the potential functions and mechanisms of ARHGEF2 in the progression of liver cancer are largely unknown. In this study, we identified the transcriptional landscapes of hepatocellular carcinoma cells treated with ARHGEF2 shRNAs. The gene enrichment assays such as KEGG and GO were used to further analyze the potential signaling pathways. Moreover, the PPI network and Reactome map were used to further identify the biological processes. The results showed that Alzheimers disease disease (AD) and Cushing syndrome (CS) are the major signaling pathways involved in the ARHGEF2-shRNAs treated hepatocellular carcinoma cells. We identified the top ten interactive genes including ICAM1, APOE, LDLR, NAT10, HSPA1A, EDN1, CACNA1C, KCNMA1, SNAI1, and ELN. Our study may provide novel mechanisms for the treatment of liver cancer by inhibiting ARHGEF2.
- organism: human
- assay: bulk RNA-seq
- research focus: differential expression
- approach: statistical model
- Citations
- 0
Reproducibility ledger
Nobody has reported trying to reproduce this paper yet. Did you replicate an experiment or run the code? Your report saves the next lab a week.
Sign in to file a reproducibility report.
Related papers
- PHAROH lncRNA regulates c-Myc translation in hepatocellular carcinoma via sequestering TIAR
A. T. Yu, C. Berasain, … D. L. Spector·bioRxiv·Mar 23, 2021
- Intercellular crosstalk regulating ARRB2/RARRES1 is involved in transition from fibrosis to cancer
Robert Schierwagen, Peter Dietrich, … Jonel Trebicka·bioRxiv·Sep 8, 2021
- NRF2 co-opts the SWI/SNF complex to drive liver cell plasticity
Athena Jessica S. Ong, Chapman CH Wong, … Andrew Graham Cox·bioRxiv·Jun 2, 2026
- Targeting AATF reprograms the tumor microenvironment and suppresses hepatocellular carcinoma via MIR100HG TGFβ signaling
Diwakar Suresh, Akshatha N. Srinivas, … Divya P. Kumar·Molecular Therapy OncologyPeer-reviewed·Jun 6, 2026
- HAF Prevents Hepatocyte Apoptosis and Hepatocellular Carcinoma through Transcriptional Regulation of the NF-κB pathway.
K. Acuna-Pilarte, E. C. Reichert, … M. Y. Koh·bioRxiv·Jan 9, 2024
- Liver X Receptor; Controls Hepatic Stellate Cell Activation via Hedgehog Signaling