PeerJBioinformaticsPeer-reviewed journal article
High-performance pipeline for MutMap and QTL-seq
Yu SugiharaiD, Lester YoungiD, Hiroki Yaegashi, Satoshi NatsumeiD, Daniel John SheaiD, Hiroki TakagiiD, Helen BookeriD, Hideki InnaniD, Ryohei TerauchiiD, Akira AbeiD
- Citations
- 99
- FWCI
- 10.85
- Field percentile
- top 1%
Abstract
Bulked segregant analysis implemented in MutMap and QTL-seq is a powerful and efficient method to identify agronomically important loci. However, the previous pipelines were not user-friendly to install and run. Here, we describe new pipelines for MutMap and QTL-seq. These updated pipelines are approximately 5-8 times faster than the previous pipeline, are easier for novice users to use and can be easily installed through bioconda with all dependencies.
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