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bioRxivCell BiologyPreprint

OpenFIBSEM: an application programming interface for easy FIB/SEM automation

P. Cleeve, D. Dierickx, G. Buckley, S. Gorelick, L. Naegele, L. Burne, J. C. Whisstock, A. de Marco

PDFDOI

Abstract

Automation in microscopy is the key to success in long and complex experiments. Most microscopy manufacturers provide Application Programming Interfaces (API) to enable communication between a user-defined program and the hardware. Although APIs effectively allow the development of complex routines involving hardware control, the developers need to build the applications from basic commands. Here we present a Software Development Kit (SDK) for easy control of Focussed Ion Beam Scanning Electron Microscopes (FIB/SEM) microscopes. The SDK, which we named OpenFIBSEM consists of a suite of building blocks for easy control that simplify the development of complex automated workflows.

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