bioRxivNeurosciencePreprint
Spatiotemporal Mapping and Molecular Basis of Whole-brain Circuit Maturation
Jian XueiD, Andrew T. BrawneriD, Jacqueline R. ThompsoniD, Tushar Devanand YelhekariD, Kyra T. NewmasteriD, Qiang QiuiD, Yonatan A. CooperiD, C. Ron YuiD, Yasir H. Ahmed-Braima, Yongsoo KimiD, Yingxi LiniD
Abstract
Brain development is highly dynamic and asynchronous, marked by the sequential maturation of functional circuits across the brain. The timing and mechanisms driving circuit maturation remain elusive due to an inability to identify and map maturing neuronal populations. Here we create DevATLAS (Developmental Activation Timing-based Longitudinal Acquisition System) to overcome this obstacle. We develop whole-brain mapping methods to construct the first longitudinal, spatiotemporal map of circuit maturation in early postnatal mouse brains. Moreover, we uncover dramatic impairments within the deep cortical layers in a neurodevelopmental disorders (NDDs) model, demonstrating the utility of this resource to pinpoint when and where circuit maturation is disrupted. Using DevATLAS, we reveal that early experiences accelerate the development of hippocampus-dependent learning by increasing the synaptically mature granule cell population in the dentate gyrus. Finally, DevATLAS enables the discovery of molecular mechanisms driving activity-dependent circuit maturation.
- organism: mouse
- assay: spatial transcriptomics
- research focus: cell type annotation
- research focus: trajectory inference
- research focus: differential expression
- research focus: cell-cell communication
- approach: experimental assay
- Citations
- 5
Reproducibility ledger
Nobody has reported trying to reproduce this paper yet. Did you replicate an experiment or run the code? Your report saves the next lab a week.
Sign in to file a reproducibility report.
Related papers
- Growth-adaptive spring electronics for long-term, same-neuron mapping in the developing rat brain
Ariel J. Lee, Hao Sheng, … Jia Liu B·bioRxiv·Feb 18, 2026
- Structured dynamics of neural activity across developing neocortex
James B Ackman, Hongkui Zeng, Michael C Crair·bioRxiv·Dec 5, 2014
- Understanding Neural Circuit Development Through Theory And Models
Leonidas M. A. Richter, Julijana Gjorgjieva·Current Opinion in NeurobiologyPeer-reviewed·Aug 1, 2017
- Longitudinal monitoring of developmental plasticity in the mouse auditory cortex
Megan A. Kirchgessner, Mihir Vaze, Robert C. Froemke·bioRxiv·May 12, 2025
- Homeostasis of columnar synchronization during cortical map formation
Matthew T Colonnese, Jing Shen·Frontiers in Cellular NeurosciencePeer-reviewed·Sep 20, 2017
- A spatio-temporaral atlas of the growing brain for fMRI studies
Maria Murgasova, Valentina Doria, … Daniel Rueckert·bioRxiv·Apr 15, 2024