medRxivGenetic & Genomic MedicinePreprint
Genetic influences on the intrinsic and extrinsic functional organizations of the cerebral cortex
Bingxin ZhaoiD, Tengfei LiiD, Stephen M. SmithiD, Zirui FaniD, Xiaochen YangiD, Yilin YangiD, Juan ShuiD, Di XiongiD, Xifeng WangiD, Yue YangiD, Tianyou LuoiD, Ziliang Zhu, Yue ShaniD, Yujue Li, Zhenyi WuiD, Heping Zhang DiD, Yun LiiD, Jason L. SteiniD, Hongtu Zhu BiD
Abstract
The human cerebral cortex is a vital component of brain function, but the genetic influences on cortical functional organization remain poorly understood. In this study, we used a parcellation-based approach to process resting-state and task-evoked functional magnetic resonance imaging (fMRI) from over 48,000 individuals in UK Biobank and ABCD studies. We identified 47 loci associated with functional areas and networks at rest, 15 of which also affected functional connectivity during task performance. We observed patterns of heritability and locus-specific genetic effects across different brain functional areas and networks. Our findings suggest that specific functional areas and networks share genetic influences with cognition, mental health, and major brain disorders such as Alzheimers disease and schizophrenia. For example, the APOE {varepsilon}4 locus strongly associated with Alzheimers disease was particularly associated with the visual cortex in the secondary visual and default mode networks in both resting and task fMRI. This study contributes to our understanding of the genetic determinants of cerebral cortex function by analyzing biobank-scale fMRI data in high-resolution brain parcellation. Additionally, it prioritizes genetically associated fMRI traits for specific brain disorders.
- organism: human
- assay: imaging
- research focus: gene regulatory network inference
- research focus: GWAS / association mapping
- approach: statistical model
- Citations
- 17
Reproducibility ledger
Nobody has reported trying to reproduce this paper yet. Did you replicate an experiment or run the code? Your report saves the next lab a week.
Sign in to file a reproducibility report.
Related papers
- A connection-level genetic atlas of human cortical functional connectivity at rest and during a task
Shushan Wu, Bingxin Zhao, … Hongtu Zhu·medRxiv·Oct 30, 2026
- Common variants contribute to intrinsic human brain functional networks
Bingxin Zhao, Tengfei Li, … Hongtu Zhu B·Nature GeneticsPeer-reviewed·Apr 1, 2022
- Disentangling cortical functional connectivity strength and topography reveals divergent roles of genes and environment
Bianca Burger, Karl‐Heinz Nenning, … Georg Langs·NeuroImagePeer-reviewed·Nov 30, 2021
- The genetic architecture of the human cerebral cortex
Katrina L. Grasby, Neda Jahanshad, … Yuri Milaneschi·SciencePeer-reviewed·Mar 19, 2020
- The genetic landscape of heterogeneity in human functional brain connectivity
Bernardo de A.P.C. Maciel, Marijn Schipper, … Martijn P. van den Heuvel·Nature CommunicationsPeer-reviewed·Feb 24, 2026
- Shared genetic architecture between mental health and the brain functional connectome in the UK Biobank
Daniël Roelfs, Oleksandr Frei, … Tobias Kaufmann·medRxiv·Jun 24, 2022