The role of incoherent feedforward circuits in regulating precision of event timing
Supravat DeyiD, Sherin KannolyiD, Pavol BokesiD, John J. DennehyiD, Abhyudai SinghiD
Abstract
Triggering of cellular events often relies on the level of a key gene product crossing a critical threshold. Achieving precision in event timing in spite of noisy gene expression facilitates high-fidelity functioning of diverse processes from biomolecular clocks, apoptosis and cellular differentiation. Here we investigate the role of an incoherent feedforward circuit in regulating the time taken by a bacterial virus (bacteriophage lambda) to lyse an infected Escherichia coli cell. Lysis timing is the result of expression and accumulation of a single lambda protein (holin) in the E. coli cell membrane up to a critical threshold level, which triggers the formation of membrane lesions. This easily visualized process provides a simple model system for characterizing event-timing stochasticity in single cells. Intriguingly, lambdas lytic pathway synthesizes two functionally opposite proteins: holin and antiholin from the same mRNA in a 2:1 ratio. Antiholin sequesters holin and inhibits the formation of lethal membrane lesions, thus creating an incoherent feedforward circuit. We develop and analyze a stochastic model for this feedforward circuit that considers correlated bursty expression of holin/antiholin, and their concentrations are diluted from cellular growth. Interestingly, our analysis shows the noise in timing is minimized when both proteins are expressed at an optimal ratio, hence revealing an important regulatory role for antiholin. These results are in agreement with single cell data, where removal of antiholin results in enhanced stochasticity in lysis timing.
02 /Specification & Classification
Click any tag to browse matching papers- Citations
- 6
- Organism
- Approach
Reproducibility ledger
Nobody has reported trying to reproduce this paper yet. Did you replicate an experiment or run the code? Your report saves the next lab a week.
Sign in to file a reproducibility report.
Related papers
- Optimum Threshold Minimizes Noise in Timing of Intracellular Events
S. Kannoly, T. Gao, … J. J. Dennehy·bioRxiv·Feb 14, 2020
- Controlling noise in the timing of intracellular events: A first-passage time approach
Khem Raj Ghusinga, John J Dennehy, Abhyudai Singh·Proceedings of the National Academy of SciencesPeer-reviewed·Jan 9, 2017
- Translation Efficiency Impacts Phage Lysis Timing and Its Precision in Single Cells
Sherin Kannoly, Kevin Singh, … John J. Dennehy·bioRxiv·May 14, 2025
- Event timing precision in stochastic gene expression withbursty production
Sayeh Rezaee, Pavol Bokes, Abhyudai Singh·bioRxiv·Oct 28, 2026
- Mixed-Feedback Architectures for Precise Event Timing Through Stochastic Accumulation of Biomolecules
Sayeh Rezaee, César Nieto, Abhyudai Singh·bioRxiv·May 22, 2023
- Spatial and temporal control of lysis by the lambda holin