napariTFM: An Open-Source Tool for Traction ForceMicroscopy and Monolayer Stress Microscopy

Abstract

Cellular force generation and transmission are fundamental processes driving cell migration, division, tissue morphogenesis, and disease progression. Traction Force Microscopy (TFM) and Monolayer Stress Microscopy (MSM) have emerged as essential techniques for quantifying these mechanical processes, but current software solutions are fragmented across multiple platforms with varying degrees of usability and accessibility. Here, we present napariTFM, a comprehensive open-source plugin for the napari image viewer that integrates state-of-the-art algorithms for both TFM and MSM analysis within an intuitive graphical user interface. The software implements TV-L1 optical flow for displacement analysis, Fourier Transform Traction Cytometry (FTTC) for force reconstruction, and finite element methods for stress calculation, supporting both single-frame and time-series analysis of 2D microscopy data. Systematic validation using synthetic datasets with known ground truth values demonstrated excellent accuracy, with correlation coefficients above 0.9 for most situations. Real-time parameter adjustment and immediate visualization capabilities enable interactive optimization of analysis parameters and quality assessment during processing. Finally, we demonstrate the softwares capabilities through analysis of optogenetic contractility experiments in cell doublets. napariTFM addresses critical gaps in the cellular mechanics software ecosystem by combining algorithmic rigor with practical usability, providing the research community with an accessible platform for quantitative studies of cellular force generation and transmission.