JCO Precision OncologyGenetic & Genomic MedicinePeer-reviewed journal article
CLINICAL OPPORTUNITIES FOR GERMLINE PHARMACOGENETICS AND MANAGEMENT OF DRUG-DRUG INTERACTIONS IN PATIENTS WITH ADVANCED SOLID CANCERS
Tyler ShuggiD, Reynold C. LyiD, Elizabeth J. RoweiD, Santosh PhilipsiD, Mustafa A HyderiD, Milan RadovichiD, Marc B. RosenmaniD, Victoria M. PrattiD, John Thomas CallaghaniD, Zeruesenay DestaiD, Bryan Paul SchneideriD, Todd C. SkaariD
Abstract
PURPOSEPrecision medicine approaches, including germline pharmacogenetics (PGx) and management of drug-drug interactions (DDIs), are likely to benefit advanced cancer patients who are frequently prescribed multiple concomitant medications to treat cancer and associated conditions. Our objective was to assess the potential opportunities for PGx and DDI management within a cohort of adults with advanced cancer. PATIENTS AND METHODSMedication data were collected from the electronic health records (EHRs) for 481 subjects since their first cancer diagnosis. All subjects were genotyped for variants with clinically actionable recommendations in Clinical Pharmacogenetics Implementation Consortium (CPIC) guidelines for 13 pharmacogenes. DDIs were defined as concomitant prescription of strong inhibitors or inducers with sensitive substrates of the same drug-metabolizing enzyme and were assessed for six major cytochrome P450 (CYP) enzymes. RESULTSApproximately 60% of subjects were prescribed at least one medication with CPIC recommendations, and [~]14% of subjects had an instance for actionable PGx, defined as prescription of a drug in a subject with an actionable genotype. The overall subject-level prevalence of DDIs and serious DDIs were 50.3% and 34.8%, respectively. Serious DDIs were most common for CYP3A, CYP2D6, and CYP2C19, occurring in 24.9%, 16.8%, and 11.7% of subjects, respectively. When assessing PGx and DDIs together, [~]40% of subjects had at least one opportunity for a precision medicine-based intervention and [~]98% of subjects had an actionable phenotype for at least one CYP enzyme. CONCLUSIONOur findings demonstrate numerous clinical opportunities for germline PGx and DDI management in adults with advanced cancer.
- organism: human
- assay: electronic health records
- research focus: benchmarking
- approach: statistical model
- Citations
- 19
- FWCI
- 3.88
- Field percentile
- top 6%
Reproducibility ledger
Nobody has reported trying to reproduce this paper yet. Did you replicate an experiment or run the code? Your report saves the next lab a week.
Sign in to file a reproducibility report.
Related papers
- Evaluating the frequency and the impact of pharmacogenetic alleles in an ancestrally diverse Biobank population
Shefali S. Verma, Karl Keat, … Sony Tuteja·Journal of Translational MedicinePeer-reviewed·Nov 28, 2022
- Adherence to International Pharmacogenomic Recommendations in Paediatric Cancer Care: A Cohort Analysis Embedded Within the MARVEL-PIC Randomised Trial
Aniket Chawla, Sean Carter, … Rachel K. Conyers·medRxiv·Apr 16, 2026
- The Contribution of Pharmacogenetic Drug Interactions to 90-Day Hospital Readmissions: Preliminary Results from a Real-World Healthcare System
Sean P. David, Lavisha Singh, … Henry Mark Dunnenberger·Journal of Personalized MedicinePeer-reviewed·Nov 23, 2021
- Widespread adoption of precision anticancer therapies after implementation of pathologist-directed comprehensive genomic profiling across a large US health system
Alexa K. Dowdell, Ryan Meng, … Brian Piening·JCO Oncology PracticePeer-reviewed·Nov 1, 2024
- Collateral damage of NUDT15 deficiency in cancer provides a cancer pharmacogenetic therapeutic window with thiopurines
Jacob C. Massey, Joseph Magagnoli, … Michael D. Wyatt·bioRxiv·Apr 8, 2024
- CLINICAL IMPLEMENTATION OF PREEMPTIVE PHARMACOGENOMICS TESTING FOR PERSONALIZED MEDICINE AT AN ACADEMIC MEDICAL CENTER
Bani Tamraz, Jaekyu Shin, … Aleksandar Rajkovic·Journal of the American Medical Informatics AssociationPeer-reviewed·Nov 12, 2024