Nature Ecology & EvolutionNeurosciencePeer-reviewed journal article
Ancient origin of the rod bipolar cell pathway in the vertebrate retina
Ayana HellevikiD, Philip Mardoum, Joshua HahniD, Yvonne KölschiD, Florence D. D’OraziiD, Sachihiro C. Suzuki, Leanne GodinhoiD, Owen T. Lawrence, Fred M RiekeiD, Karthik ShekhariD, Joshua R. SanesiD, Herwig BaieriD, Tom BadeniD, Rachel WongiD, Takeshi YoshimatsuiD
Abstract
Vertebrates rely on rod photoreceptors for vision in low-light conditions1. Mammals have a specialized downstream circuit for rod signaling called the primary rod pathway, which comprises specific cell types and wiring patterns that are thought to be unique to this lineage2-6. Thus, it has been long assumed that the primary rod pathway evolved in mammals3, 5-7. Here, we challenge this view by demonstrating that the mammalian primary rod pathway is conserved in zebrafish, which diverged from extant mammals [~]400 million years ago. Using single-cell RNA-sequencing, we identified two bipolar cell (BC) types in zebrafish that are related to mammalian rod BCs (RBCs) of the primary rod pathway. By combining electrophysiology, histology, and ultrastructural reconstruction of the zebrafish RBCs, we found that, like mammalian RBCs8, both zebrafish RBC types connect with all rods and red-cones in their dendritic territory, and provide output largely onto amacrine cells. The wiring pattern of the amacrine cells post-synaptic to one RBC type is strikingly similar to that of mammalian RBCs. This suggests that the cell types and circuit design of the primary rod pathway may have emerged before the divergence of teleost fish and amniotes (mammals, bird, reptiles). The second RBC type in zebrafish, which forms separate pathways from the first RBC type, is either lost in mammals or emerged in fish to serve yet unknown roles. Highlights- Zebrafish have two rod bipolar cell types (RBC1/2). - Synaptic connectivity of RBC1 resembles that of the mammalian RBCs. - The primary rod pathway therefore probably evolved more than 400 million years ago. - The second zebrafish RBC type, RBC2, forms a separate pathway from RBC1.
- organism: zebrafish
- assay: bulk RNA-seq
- research focus: cell type annotation
- approach: statistical model
- Citations
- 25
- FWCI
- 3.12
- Field percentile
- top 7%
Reproducibility ledger
Nobody has reported trying to reproduce this paper yet. Did you replicate an experiment or run the code? Your report saves the next lab a week.
Sign in to file a reproducibility report.
Related papers
- A median eye origin of the vertebrate retina explains its unique circuitry
George Kafetzis, Michael J. Bok, … Dan‐Eric Nilsson·bioRxiv·Sep 11, 2025
- Connectivity map of bipolar cells and photoreceptors in the mouse retina
Christian Behrens, Timm Schubert, … Philipp Berens·eLifePeer-reviewed·Nov 25, 2016
- Nrl is dispensable for specification of rod photoreceptors in adult zebrafish contrasting a deeply conserved requirement earlier in ontogeny
A. Phillip Oel, Gavin J. Neil, … W. Ted Allison·iSciencePeer-reviewed·Nov 15, 2020
- Mammalian Retinal Bipolar Cells: Morphological Identification and Systematic Classification in Rabbit Retina, with a Comparative Perspective
Edward V. Famiglietti·The Journal of Comparative NeurologyPeer-reviewed·Feb 1, 2025
- A retinal adrenergic module tunes mammalian visual evolution
Fu-Sheng Tang, Kong Miao-miao, … Jiang-Bin Ke·bioRxiv·Aug 19, 2026
- Molecular Characterization of the Sea Lamprey Retina Illuminates the Evolutionary Origin of Retinal Cell Types
J. Wang, L. Zhang, … Y.-R. Peng·bioRxiv·Dec 10, 2023