Journal of Theoretical BiologySystems BiologyPeer-reviewed journal article
The unreasonable effectiveness of the total quasi-steady state approximation, and its limitations
Justin EilertseniD, Santiago D. SchnelliD, Sebastian WalcheriD
Abstract
In this note, we discuss the range of parameters for which the total quasi-steady-state approximation of the Michaelis-Menten reaction mechanism holds validity. We challenge the prevalent notion that total quasi-steady-state approximation is "roughly valid" across all parameters, showing that its validity cannot be assumed, even roughly, across the entire parameter space -- when the initial substrate concentration is high. On the positive side, we show that the linearized one-dimensional equation for total substrate is a valid approximation when the initial reduced substrate concentration s0/KM is small. Moreover, we obtain a precise picture of the long-term time course of both substrate and complex.
- Citations
- 8
- FWCI
- 3.30
- Field percentile
- top 9%
Reproducibility ledger
Nobody has reported trying to reproduce this paper yet. Did you replicate an experiment or run the code? Your report saves the next lab a week.
Sign in to file a reproducibility report.
Related papers
- The relative values of the turnover number and the dissociation rate constant determine the definition of the Michaelis-constant
Gassan Nazzal·bioRxiv·May 16, 2016
- Theory on the rate equations of Michaelis-Menten type enzyme kinetics with competitive inhibition
R. Murugan·bioRxiv·Nov 28, 2022
- Derivation of Steady-State First-order Rate Constant Equations for Enzyme-Substrate Complex Dissociation, as well as Zero-order Rate Constant Equations in Relation to Background Assumptions
I. I. Udema·bioRxiv·Dec 15, 2022
- The meaning of the Michaelis-Menten constant: Km describes a steady-state.
E. I. Canela, G. Navarro, … R. Franco·bioRxiv·May 15, 2019
- On the estimation errors of KM and V from time-course experiments using the Michaelis-Menten equation
Wylie Stroberg, Santiago Schnell·bioRxiv·Sep 6, 2016
- Theory On The Rate Equation Of Michaelis-Menten Type Single-Substrate Enzyme Catalyzed Reactions
R. Murugan·bioRxiv·May 29, 2017