bioRxivCancer BiologyPreprint
Breast Cancer Reaction-Diffusion from Spectral-Spatial Analysis in Immunohistochemistry
S. Pasetto, M. U. Zahid, R. Diaz, M. Montejo, M. Rosa, R. Gatenby, H. Enderling
Abstract
Cancer is a prevalent disease, and while many significant advances have been made, the ability to accurately predict how an individual tumor will grow - and ultimately respond to therapy - remains limited. We use spatial-spectral analysis of 20 patients accrued to a phase II study of preoperative SABR with 9.5 x 3 Gy for early-stage breast cancer whose tissues were stained with multiplex immunofluorescence. We employ the reaction-diffusion framework to compare the data-deduced two-point correlation function and the corresponding spatial power spectral distribution with the theoretically predicted ones. A single histopathological slice suffices to characterize the reaction-diffusion equation dynamics through its power spectral density giving us an interpretative key in terms of infiltration and diffusion of cancer on a per-patient basis. This novel approach tackles model-parameter-inference problems for tumor infiltration and can immediately inform clinical treatments.
- organism: human
- assay: imaging
- assay: fluorescence / live-cell microscopy
- research focus: cell type annotation
- research focus: clustering
- research focus: differential expression
- research focus: spatial domain detection
- approach: statistical model
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