bioRxivSynthetic BiologyPreprint
Ribozyme-based biosensor for imaging gene expression in plants
Yang LiuiD, Ruchika RajputiD, Torik Islam, Ilenne Del ValleiD, Tao YaoiD, Rekha Agarwal, Brandon A. BooneiD, Carrie A. EckertiD, Paul E. AbrahamiD, Jin‐Gui CheniD, Gerald A. TuskaniD, Xiaohan YangiD
Abstract
Detection of gene expression in plants is critical for understanding the molecular basis of complex plant biosystems and plant responses to environmental stresses. Here, we report the development of a split ribozyme-based biosensor that enables in vivo visualization of gene expression in plants. We demonstrated the utility of this biosensor in transient expression experiments (i.e., leaf infiltration in Nicotiana benthamiana) to detect RNAs derived from transgenes and tobacco rattle virus, respectively. Furthermore, we successfully engineered a split ribozyme-based biosensor in Arabidopsis thaliana for in vivo visualization of endogenous gene expression at the cellular level. In addition, we developed a platform for easy incorporation of different reporters into the RNA biosensor.
- Citations
- 0
Reproducibility ledger
Nobody has reported trying to reproduce this paper yet. Did you replicate an experiment or run the code? Your report saves the next lab a week.
Sign in to file a reproducibility report.
Related papers
- Intronised fluorophores improve reporter output and biosensor expression in plants
Sebastian Samwald, Tom Schreiber, Tonni Grube Andersen·bioRxiv·Sep 22, 2026
- Elucidating design principles for Ribozyme-Enabled Tissue Specificity (RETS) to allow precise expression without specialized promoters.
Max M. Combest, Josh Conlin, … Arjun Khakhar·bioRxiv·Aug 14, 2025
- A theophylline-responsive riboswitch regulates expression of nuclear-encoded genes in Arabidopsis
N. Shanidze, F. Lenkeit, … D. Funck·bioRxiv·Oct 25, 2019
- A split ribozyme that links detection of a native RNA to orthogonal protein outputs
Lauren Gambill, August O. Staubus, … James Chappell·Nature CommunicationsPeer-reviewed·Feb 1, 2023
- In vivo visualization of nitrate dynamics using a genetically encoded biosensor
Y.-N. Chen, H. N. Cartwright, C.-H. Ho·bioRxiv·Aug 29, 2022
- Plant-based biosensors for detecting CRISPR-mediated genome engineering
G. Yuan, M. M. Hassan, … X. Yang·bioRxiv·Sep 27, 2021