Wheat and Barley Genetics and Pathology

The paper assesses allelic diversity of 42 functional genes in East African wheat cultivars to identify beneficial alleles for genetic improvement.

This study uses whole-genome sequencing of Triticum and Aegilops populations to show that introgression from wild relatives contributed 13-36% of the bread wheat genome, enhancing genetic diversity and enabling adaptation, while convergent adaptation to human selection was enriched despite ploidy and environmental differences.

The paper develops and validates co-dominant PCR markers for the barley leaf rust resistance genes Rph20 and Rph24.

The paper constructs a genetic map for Kazakh bread wheat using KASP SNP markers to identify genes associated with agronomic traits.

The paper identifies wheat NLR-ID fusion proteins and shows their role in immune receptor diversification through domain fusions and alternative splicing.

The paper examines introgression patterns from Aegilops tauschii into wheat cultivars, finding that introgression is influenced by recombination rates and selection pressures.

The paper develops wheat-Aegilops caudata introgression lines and characterizes them using KASP markers and mcGISH, mapping 182 markers and identifying chromosomal rearrangements.

The paper presents an improved high-quality genome assembly and annotation for Tibetan hulless barley, along with a new database for genetic resource management.

The paper identifies a Type II Fusarium head blight susceptibility factor on wheat chromosome 4D and refines its location to a 31.7 Mbp interval.

The paper maps the Yr7 yellow rust resistance gene in wheat using QTL mapping, association mapping, and mapping-by-sequencing, narrowing the interval to a candidate gene.

The paper presents a high-quality genome assembly for the barley cultivar Golden Promise, useful for genetic research and CRISPR-Cas9 experiments.

The paper identifies a major QTL and marker for high arabinoxylan fibre in white wheat flour using crosses with high and average AX cultivars.

This study identifies genetic variation affecting tiller number and rate in barley, finding correlations with agronomic traits and QTL overlapping with days to heading and spike row-type.

The paper uses BSA-exome-seq to fine-map the ERA8 mutant in wheat to the TaMKK3-A locus, identifying a missense mutation linked to ABA hypersensitive germination.

This study uses RNA-seq to analyze allele-specific expression in barley hybrids, finding that cis-regulatory effects dominate over trans effects and are stable under cold stress.

The paper identifies a new leaf rust resistance gene, LrSyn137, in synthetic hexaploid wheat line Syn137 through cytogenetic and molecular mapping.

The paper shows that three yellow rust resistance genes in wheat are all encoded by the same locus Wtk1, but their resistance responses vary depending on genetic background.

TRITEX improves chromosome-scale genome assemblies for Triticeae crops using open-source tools and multiple sequencing data types.

The paper identifies broad-spectrum powdery mildew resistance gene candidates on chromosome 2Mb of Aegilops biuncialis using RNA-seq and molecular marker analysis.

The paper shows that the Ug99 wheat stem rust pathogen emerged through somatic hybridisation and nuclear exchange between dikaryons, with one haploid nucleus genotype shared with an older African lineage.

The paper identifies TaAPO-A1, a wheat gene orthologous to rice APO1, associated with spikelet number and related traits in wheat.

The paper validates a stem rust resistance QTL on chromosome 2U of Ae. umbellulata using bulk segregant analysis and refines its position to 3.2 Mbp.

The paper compares five genomes of Pyrenophora teres f. teres to identify sub-telomeric regions as key drivers of virulence through comparative genomic analysis.

The paper identifies genetic loci associated with low temperature and drought tolerance in barley using environmental association and linkage disequilibrium analysis.

The paper validates a resistance locus for Fusarium crown rot in barley using near-isogenic lines and transcriptomic analysis, identifying candidate genes and SNPs markers.

The paper describes the creation of an ORFeome library for Zymoseptoria tritici, providing a resource for functional genomics studies of this wheat pathogen.

The paper identifies 17 genomic regions and 42 QTL associated with grain size in einkorn wheat using linkage mapping and RNA-seq, highlighting starch biosynthesis as key.