Author

Cécile Monat

Centre de Coopération Internationale en Recherche Agronomique pour le DéveloppementORCID 0000-0002-0574-3976Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Bioinformatics· 3 Genomics· 3

Signature Assays, Organisms & Methods

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Assay:whole-genome sequencing· 6 Approach:experimental assay· 4 Research Focus:benchmarking· 2 Research Focus:database / resource· 2 Research Focus:genome assembly· 2 Research Focus:software / tool· 2 Research Focus:variant calling· 2 Assay:bulk RNA-seq· 1

Frequent Co-Authors

François SabotiD· 3 shared Chengdao LiiD· 2 shared Christine Tranchant‐DubreuiliD· 2 shared Éloi DurantiD· 2 shared Mathieu RouardiD· 2 shared Ndomassi Tando· 2 shared Stéfan EngeleniD· 2 shared Abdoulaye Diallo· 1 shared

Activity by Year

2018-2026 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 16 mutual co-author links

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3 shared papersBioinformatics

François SabotORCID

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Author profile →

6 papers

Recent·Most cited

SaVanache: indexing and visualizing pangenome variation graphs

Mourdas Mohamed, Éloi Durant, Mathieu Rouard, Cédric Muller, Cécile Monat, Matthieu G. Conte, François Sabot

SaVanache provides a visualization tool for exploring pangenome variation graphs, enabling interactive analysis of genetic diversity and structural variations.

bioRxiv · Oct 1, 2026 · PreprintBioinformatics

Wheat Panache - a pangenome graph database representing presence/absence variation across 16 bread wheat genomes

Philipp E. Bayer, Jakob Petereit, Éloi Durant, Cécile Monat, Mathieu Rouard, Haifei Hu, Brett Chapman, Chengdao Li, Shifeng Cheng, Jacqueline Batley, David Edwards

bioRxiv · Feb 23, 2022 · PreprintBioinformatics

Long-read and chromosome-scale assembly of the hexaploid wheat genome achieves high resolution for research and breeding

Jean‐Marc Aury, Stéfan Engelen, Benjamin Istace, Cécile Monat, Pauline Lasserre‐Zuber, Caroline Belser, Corinne Cruaud, Hélène Rimbert, Philippe Leroy, Sandrine Arribat, Isabelle Dufau, Arnaud Bellec, David Grimbichler, Nathan Papon, Etienne Paux, , Frédéric Choulet

This paper presents a high-quality chromosome-scale genome assembly of bread wheat using long-read sequencing, enhancing research and breeding applications.

GigaScience · Jan 1, 2022Peer-reviewedGenomics

TRITEX: chromosome-scale sequence assembly of Triticeae genomes with open-source tools

Cécile Monat, Sudharsan Padmarasu, Thomas M. Lux, Thomas Wicker, Heidrun Gundlach, Axel Himmelbach, Jennifer Ens, Chengdao Li, Gary J. Muehlbauer, Alan Howard Schulman, Robbie Waugh, Ilka Braumann, Curtis Jerry Pozniak, Uwe Scholz, Klaus Mayer, , Martin Mascher

TRITEX improves chromosome-scale genome assemblies for Triticeae crops using open-source tools and multiple sequencing data types.

Genome biology · Dec 1, 2019Peer-reviewedGenomics

TOGGLe, a flexible framework for easily building complex workflows and performing robust large-scale NGS analyses

Christine Tranchant‐Dubreuil, Sébastien Ravel, Cécile Monat, Gautier Sarah, Abdoulaye Diallo, Laura Helou, Alexis Dereeper, Ndomassi Tando, Julie Orjuela, François Sabot

bioRxiv · Feb 27, 2018 · PreprintBioinformatics

Comparison of two African rice species through a new pan-genomic approach on massive data

Cécile Monat, Christine Tranchant‐Dubreuil, Stéfan Engelen, Karine Labadie, Emmanuel Paradis, Ndomassi Tando, François Sabot

The paper compares two African rice species using a pan-genomic approach, finding that the cultivated species has a smaller core-genome and dispensable genome compared to the wild species.

bioRxiv · Jan 9, 2018 · PreprintGenomics