Author

A. Nichols

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Microbiology· 3 Biophysics· 1 Cell Biology· 1

Signature Assays, Organisms & Methods

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Approach:experimental assay· 4 Organism:human· 3 Organism:bacteria (other)· 2 Research Focus:cell type annotation· 1 Research Focus:database / resource· 1 Approach:deep learning· 1 Research Focus:differential expression· 1 Research Focus:drug response / drug discovery· 1

Frequent Co-Authors

A. Adhikari· 1 shared A. Curtis· 1 shared A. D. Lyden· 1 shared A. D. Steele· 1 shared A. Dee· 1 shared A. E. Acosta-Martin· 1 shared A. F. Kiefer· 1 shared A. J. Cepeda· 1 shared

Activity by Year

2019-2023 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 9 mutual co-author links

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Curved chords = mutual co-authorship

1 shared paperMicrobiology

A. Adhikari

Mutual co-authors in cluster

Author profile →

5 papers

Recent·Most cited

The Natural Products Discovery Center: Release of the First 8490 Sequenced Strains for Exploring Actinobacteria Biosynthetic Diversity

E. Kalkreuter, S. A. Kautsar, D. Yang, C. N. Teijaro, C. D. Bader, L. L. Fluegel, C. M. Davis, J. R. Simpson, A. D. Steele, C. Gui, S. Meng, G. Li, K. Viehrig, F. Ye, P. Su, , B. Shen

The paper introduces the Natural Products Discovery Center, releasing 8490 sequenced Actinobacteria strains and highlighting their taxonomic and biosynthetic diversity.

bioRxiv · Dec 14, 2023 · PreprintMicrobiology

Lanthanide Cathodophores for Multicolor Electron Microscopy

S. Abdul Rehman, J. B. Conway, A. Nichols, E. R. Soucy, A. Dee, K. Stevens, S. Merminod, I. MacNaughton, A. Curtis, M. B. Prigozhin

This paper demonstrates multicolor single-particle cathodoluminescence imaging of lanthanide nanocrystals in mammalian cells alongside ultrastructural EM imaging.

bioRxiv · Dec 11, 2023 · PreprintBiophysics

PGfinder, a novel analysis pipeline for the consistent, reproducible and high- resolution structural analysis of bacterial peptidoglycans

A. V. Patel, R. D. Turner, A. Rifflet, A. E. Acosta-Martin, A. Nichols, M. M. Awad, D. Lyras, I. Gomperts Boneca, M. Bern, M. Collins, S. Mesnage

PGfinder provides an automated pipeline for high-resolution structural analysis of bacterial peptidoglycans, enabling consistent and reproducible quantification of PG fragments and discovery of novel structural features.

bioRxiv · Jun 1, 2021Microbiology

Fibrotic human lung extracellular matrix as a disease-specific substrate for 3D in-vitro models of pulmonary fibrosis

I. Germanguz, E. Aranda, J. C. Xiong, N. Kissel, A. Nichols, E. Gadee, J. D. O'Neill

The paper develops a 3D in-vitro model of pulmonary fibrosis using fibrotic lung extracellular matrix to study disease mechanisms and test antifibrotic agents.

bioRxiv · Nov 7, 2019 · PreprintCell Biology

Investigating Transfusion-Related Sepsis using Culture-Independent Metagenomic Sequencing

E. D. Crawford, J. Kamm, S. Miller, L. Li, S. Caldera, A. D. Lyden, D. Yokoe, A. Nichols, N. K. Tran, S. Barnhard, P. M. Conner, A. Nambiar, M. S. Zinter, M. Moayeri, P. Hayakawa Serpa, , C. Langelier

This study uses metagenomic sequencing to identify pathogens in transfusion-related sepsis cases, revealing a novel Acinetobacter species and demonstrating the utility of culture-independent methods.

bioRxiv · Sep 16, 2019Microbiology