Author

A. W. Thompson

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Evolutionary Biology· 4 Immunology· 1

Signature Assays, Organisms & Methods

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Approach:statistical model· 4 Assay:bulk RNA-seq· 2 Organism:multiple species· 2 Research Focus:phylogenetics / evolution· 2 Assay:whole-genome sequencing· 2 Research Focus:cell type annotation· 1 Research Focus:chromatin & epigenetic regulation· 1 Approach:comparative / phylogenetic analysis· 1

Frequent Co-Authors

I. Braasch· 4 shared A. C. Black· 1 shared A. Castinel· 1 shared A. Cutrim Dragalzew· 1 shared A. Dornburg· 1 shared A. I. Furness· 1 shared A. Louis· 1 shared A. N. Cass· 1 shared

Activity by Year

2018-2022 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 17 mutual co-author links

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4 shared papersEvolutionary Biology

I. Braasch

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Author profile →

5 papers

Recent·Most cited

Genome structures resolve the early diversification of teleost fishes

E. Parey, A. Louis, J. Montfort, O. Bouchez, C. Roques, C. Iampietro, J. Lluch, A. Castinel, C. Donnadieu, T. Desvignes, C. F. Bucao, E. Jouanno, M. Wen, S. Mejri, R. P. Dirks, , Y. Guiguen

The paper uses genome assemblies to resolve the evolutionary relationships among early diverging teleost lineages, placing Elopomorpha and Osteoglossomorpha as sister groups.

bioRxiv · Apr 7, 2022Evolutionary Biology

Deterministic shifts in molecular evolution correlate with convergence to annualism in killifishes

A. W. Thompson, A. C. Black, Y. Huang, Q. Shi, A. I. Furness, I. Braasch, F. G. Hoffmann, G. Orti

The paper shows that annual life history in killifishes is linked to higher evolutionary rates in genes involved in development and metabolism.

bioRxiv · Aug 9, 2021 · PreprintEvolutionary Biology

Holosteans contextualize the role of the teleost genome duplication in promoting the rise of evolutionary novelties in the ray-finned fish innate immune system

A. Dornburg, D. J. Wcisel, K. Zapfe, E. Ferraro, L. Roupe-Abrams, A. W. Thompson, I. Braasch, T. Ota, J. A. Yoder

This study investigates the innate immune receptor diversity in Holostei, showing that their gene families predate the teleost genome duplication and rival teleost diversity, challenging assumptions about the TGD's role in immune innovation.

bioRxiv · Jun 11, 2021Immunology

Synergistic epistasis enhances cooperativity of mutualistic interspecies interactions

S. Turkarslan, N. Stopnisek, A. W. Thompson, C. E. Arens, J. J. Valenzuela, J. Wilson, K. A. Hunt, J. Hardwicke, S. Lim, Y. M. Seah, Y. Fu, L. Wu, J. Zhou, K. L. Hillesland, D. A. Stahl, N. S. Baliga

The paper investigates how synergistic epistasis enhances cooperativity in mutualistic interspecies interactions between Desulfovibrio vulgaris and Methanococcus maripaludis under varying sulfate conditions.

bioRxiv · Jun 22, 2020Evolutionary Biology

Deep evolutionary origin of limb and fin regeneration

S. Darnet, A. Cutrim Dragalzew, D. Baia Amaral, A. W. Thompson, A. N. Cass, J. Lorena, J. F. Sousa, C. M. Costa, M. P. Sousa, N. B. Froebisch, P. N. Schneider, M. C. Davis, I. Braasch, I. Schneider

The paper investigates the evolutionary origin of appendage regeneration in bony vertebrates by analyzing regeneration in multiple fish species and comparing genetic pathways.

bioRxiv · Dec 21, 2018Evolutionary Biology