Author

Alain A. Mir

Takara (United States)

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Signature Assays, Organisms & Methods

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Approach:benchmark study· 1 Research Focus:benchmarking· 1 Research Focus:clustering· 1 Approach:experimental assay· 1 Organism:human· 1 Assay:scATAC-seq· 1 Assay:scRNA-seq· 1 Approach:statistical model· 1

Frequent Co-Authors

Andrew A. FarmeriD· 2 shared Anja MezgeriD· 1 shared Bao Quoc TraniD· 1 shared Ben Ernest· 1 shared Charles WangiD· 1 shared Hannah ChoiiD· 1 shared Ishminder K. ManniD· 1 shared Jian‐Liang LiiD· 1 shared

Activity by Year

2018-2020 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 27 mutual co-author links

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2 shared papersGenomics

Andrew A. FarmerORCID

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Author profile →

2 papers

Recent·Most cited

A Comprehensive Multi-Center Cross-platform Benchmarking Study of Single-cell RNA Sequencing Using Reference Samples

Wanqiu Chen, Yongmei Zhao, Xin Chen, Zhaowei Yang, Xiaojiang Xu, Yingtao Bi, Vicky Chen, Jing Li, Hannah Choi, Ben Ernest, Bao Quoc Tran, Monika Mehta, Parimal Kumar, Andrew A. Farmer, Alain A. Mir, , Charles Wang

This study benchmarks scRNA-seq reproducibility across platforms and pipelines, finding that batch correction methods significantly affect results.

Nature Biotechnology · Dec 21, 2020Peer-reviewedGenomics

High-throughput chromatin accessibility profiling at single-cell resolution

Anja Mezger, Sandy L. Klemm, Ishminder K. Mann, Kara K. Brower, Alain A. Mir, Magnolia L. Bostick, Andrew A. Farmer, Polly Morrell Fordyce, Sten Linnarsson, William James Greenleaf

The paper develops a high-throughput single-cell ATAC-seq method and applies it to cluster PBMCs by hematopoietic cell type.

Nature Communications · Sep 3, 2018Peer-reviewedGenomics